Miyakogusa Predicted Gene

Lj0g3v0331039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0331039.1 tr|G7ZVP9|G7ZVP9_MEDTR Leucine-rich repeat
receptor-like protein kinase (Fragment) OS=Medicago
trunc,60.87,5e-18,LRRNT_2,Leucine-rich repeat-containing N-terminal,
type 2,CUFF.22553.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34930.1 | Symbols:  | disease resistance family protein / LR...    55   8e-09
AT5G23400.1 | Symbols:  | Leucine-rich repeat (LRR) family prote...    48   2e-06
AT3G49670.1 | Symbols: BAM2 | Leucine-rich receptor-like protein...    46   5e-06

>AT2G34930.1 | Symbols:  | disease resistance family protein / LRR
           family protein | chr2:14737169-14739886 REVERSE
           LENGTH=905
          Length = 905

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 13/84 (15%)

Query: 23  SSDTKKCMETERQALLRLKGGFSKGREVLSSWIGEDFCKWEGISCDNLTCHVTGLAI--- 79
           S+ + KC+ TERQALL  +   +     L SW G D C W G+ CD  T HV  + +   
Sbjct: 27  SAASPKCISTERQALLTFRAALTDLSSRLFSWSGPDCCNWPGVLCDARTSHVVKIDLRNP 86

Query: 80  ----------EGKLQGKLDSSISE 93
                      G L+GK+  S+++
Sbjct: 87  SQDVRSDEYKRGSLRGKIHPSLTQ 110


>AT5G23400.1 | Symbols:  | Leucine-rich repeat (LRR) family
          protein | chr5:7880603-7882372 FORWARD LENGTH=589
          Length = 589

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 12 VSILCISFFVESSDTKKCMETERQALLRLKGGFSKGRE-VLSSWIGEDFCK--WEGISCD 68
          VS L  +F + SS    C   +R  LL  K    +    VL SW+G+D C   WEG+ C+
Sbjct: 14 VSALVRNFVLSSSQQVICSSQDRATLLGFKSSIIEDTTGVLDSWVGKDCCNGDWEGVQCN 73

Query: 69 NLTCHVTGLAIE 80
            T  VTGL ++
Sbjct: 74 PATGKVTGLVLQ 85


>AT3G49670.1 | Symbols: BAM2 | Leucine-rich receptor-like protein
          kinase family protein | chr3:18417741-18420836 FORWARD
          LENGTH=1002
          Length = 1002

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 32 TERQALLRLKGGFS--KGREVLSSW-IGEDFCKWEGISCDNLTCHVTGLAIEG-KLQGKL 87
          TE  ALL LK  F+  +   +L+SW +   FC W G++CD    HVT L + G  L G L
Sbjct: 26 TELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTL 85

Query: 88 DSSIS 92
           S ++
Sbjct: 86 SSDVA 90