Miyakogusa Predicted Gene

Lj0g3v0330509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0330509.1 Non Chatacterized Hit- tr|C0HJ73|C0HJ73_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,60.29,0.00000000000003,seg,NULL,CUFF.22505.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13220.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   159   1e-39

>AT4G13220.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 27 Blast hits to 27 proteins in 10
           species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
           0; Plants - 27; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:7674431-7675275 REVERSE
           LENGTH=176
          Length = 176

 Score =  159 bits (402), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/154 (57%), Positives = 113/154 (73%), Gaps = 7/154 (4%)

Query: 30  HHQFSSFNSLLKLNKQAFLPNTHFRIS--RSQKPRSSFVVFAAQSNFLKVLQNAWRVGRD 87
           +  F S  S+LKL K A L N   RI+  + Q+ RS  +V +AQS+FLKVL+ AW +G+D
Sbjct: 25  NSPFLSPCSVLKL-KNASLLNLRTRIAPLQPQRLRSKTLVLSAQSSFLKVLRTAWNIGKD 83

Query: 88  GVDAGTNLVPNSVPRPIARISVTIAALSVTLFVLKSLLSTVFFVLAIVGLAYFAYLAFNK 147
           G++AGTNLVP SVPRP+ARISVTIAAL+V+LFV+KS LST FFVL  +G AYF ++A NK
Sbjct: 84  GIEAGTNLVPVSVPRPVARISVTIAALAVSLFVVKSFLSTAFFVLGTMGFAYFLFIALNK 143

Query: 148 DQEEPSGNG---GTTSPPVDDPVEEARKIMDKYK 178
           D E P   G    + S  +DDP+EEA+KIMDKYK
Sbjct: 144 D-EAPKLRGDDNSSGSKSMDDPLEEAKKIMDKYK 176