Miyakogusa Predicted Gene

Lj0g3v0330219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0330219.1 tr|Q70I39|Q70I39_LOTJA Coatomer alpha
subunit-like protein OS=Lotus japonicus PE=4
SV=1,88.89,0,COATOMER,NULL; coiled-coil,NULL; COPI_C,Coatomer, alpha
subunit, C-terminal,NODE_21365_length_635_cov_453.757477.path1.1
         (117 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G21390.1 | Symbols:  | Coatomer, alpha subunit | chr2:9152428...   214   9e-57
AT1G62020.1 | Symbols:  | Coatomer, alpha subunit | chr1:2291981...   214   1e-56

>AT2G21390.1 | Symbols:  | Coatomer, alpha subunit |
            chr2:9152428-9156577 FORWARD LENGTH=1218
          Length = 1218

 Score =  214 bits (545), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 92/117 (78%), Positives = 109/117 (93%)

Query: 1    MTVCFRSKNLASAANFARRLLETSPTIENQAKQARQVLAAAERNMTDATELNYDFRNPFV 60
            MTVC++SKN+A+AA+FAR LL+T+PTIE+QA+ ARQV+ AAERNMTDAT LNYDFRNPFV
Sbjct: 1102 MTVCYKSKNMATAAHFARSLLDTNPTIESQARTARQVMQAAERNMTDATTLNYDFRNPFV 1161

Query: 61   ICGATYVPIYRGQKDVSCPYCTSRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 117
            ICG+TYVPIY+GQKDV+CPYCT+RFVPSQE  +C+VCDLAV+GADASGLLCS SQ R
Sbjct: 1162 ICGSTYVPIYKGQKDVACPYCTARFVPSQEGNICSVCDLAVIGADASGLLCSASQVR 1218


>AT1G62020.1 | Symbols:  | Coatomer, alpha subunit |
            chr1:22919814-22923728 FORWARD LENGTH=1216
          Length = 1216

 Score =  214 bits (544), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/117 (79%), Positives = 109/117 (93%), Gaps = 1/117 (0%)

Query: 1    MTVCFRSKNLASAANFARRLLETSPTIENQAKQARQVLAAAERNMTDATELNYDFRNPFV 60
            M VC+++KNLA+A+NFARRLLETSP +++QAK ARQV+ AAERNMTD T+LNYDFRNPFV
Sbjct: 1101 MGVCYKAKNLATASNFARRLLETSP-VDSQAKMARQVVQAAERNMTDETKLNYDFRNPFV 1159

Query: 61   ICGATYVPIYRGQKDVSCPYCTSRFVPSQEAQLCTVCDLAVVGADASGLLCSPSQKR 117
            +CG+TYVPIYRGQKDVSCPYCT+RFVP+QE  +CTVCDLAV+GADASGLLCSPSQ R
Sbjct: 1160 VCGSTYVPIYRGQKDVSCPYCTARFVPNQEGNICTVCDLAVIGADASGLLCSPSQVR 1216