Miyakogusa Predicted Gene

Lj0g3v0330149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0330149.1 tr|O24327|O24327_RICCO Orf protein OS=Ricinus
communis GN=orf PE=2 SV=1,84.62,1e-18,MBF1,Multiprotein bridging
factor 1, N-terminal; ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1
(MULTI,CUFF.22493.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58680.1 | Symbols: MBF1B, ATMBF1B | multiprotein bridging fa...   115   6e-27
AT2G42680.1 | Symbols: MBF1A, ATMBF1A | multiprotein bridging fa...   112   6e-26
AT3G24500.1 | Symbols: MBF1C, ATMBF1C | multiprotein bridging fa...    61   1e-10
AT3G24500.2 | Symbols: MBF1C | multiprotein bridging factor 1C |...    60   3e-10

>AT3G58680.1 | Symbols: MBF1B, ATMBF1B | multiprotein bridging
          factor 1B | chr3:21707367-21708625 FORWARD LENGTH=142
          Length = 142

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 61/65 (93%)

Query: 1  MSGVGPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGADIETVKKFNAGTNKAASSST 60
          M+G+GP++QDWEPVV+RK+AP AAAK+DEK VNAARRSGADIETV+KFNAG+NKAASS T
Sbjct: 1  MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGT 60

Query: 61 SFNTK 65
          S NTK
Sbjct: 61 SLNTK 65


>AT2G42680.1 | Symbols: MBF1A, ATMBF1A | multiprotein bridging
          factor 1A | chr2:17774972-17776116 FORWARD LENGTH=142
          Length = 142

 Score =  112 bits (279), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/65 (80%), Positives = 59/65 (90%)

Query: 1  MSGVGPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGADIETVKKFNAGTNKAASSST 60
          M+G+GP++QDWEPVV+RKK   AAAK+DEK VNAARRSGADIETV+KFNAGTNKAASS T
Sbjct: 1  MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGT 60

Query: 61 SFNTK 65
          S NTK
Sbjct: 61 SLNTK 65


>AT3G24500.1 | Symbols: MBF1C, ATMBF1C | multiprotein bridging
          factor 1C | chr3:8918755-8919201 FORWARD LENGTH=148
          Length = 148

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 5  GPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGADIETVKKFNAGTNKAASSST--SF 62
          G ++QDWEPVVL K    +   +D KAVNAA R+G  ++TVKKF+AG+NK   S+     
Sbjct: 7  GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66

Query: 63 NTK 65
          NTK
Sbjct: 67 NTK 69


>AT3G24500.2 | Symbols: MBF1C | multiprotein bridging factor 1C |
          chr3:8918755-8919169 FORWARD LENGTH=97
          Length = 97

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 5  GPLSQDWEPVVLRKKAPTAAAKKDEKAVNAARRSGADIETVKKFNAGTNKAASSST--SF 62
          G ++QDWEPVVL K    +   +D KAVNAA R+G  ++TVKKF+AG+NK   S+     
Sbjct: 7  GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVI 66

Query: 63 NTK 65
          NTK
Sbjct: 67 NTK 69