Miyakogusa Predicted Gene

Lj0g3v0329339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0329339.1 Non Chatacterized Hit- tr|K4BXE5|K4BXE5_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,37.5,6e-18,SUBFAMILY NOT NAMED,NULL; SOX TRANSCRIPTION
FACTOR,NULL; seg,NULL,CUFF.22423.1
         (413 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G25540.2 | Symbols: PFT1 | phytochrome and flowering time reg...   305   3e-83
AT1G25540.1 | Symbols: PFT1 | phytochrome and flowering time reg...   305   3e-83

>AT1G25540.2 | Symbols: PFT1 | phytochrome and flowering time
           regulatory protein (PFT1) | chr1:8969392-8973301 REVERSE
           LENGTH=727
          Length = 727

 Score =  305 bits (782), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 191/378 (50%), Positives = 246/378 (65%), Gaps = 27/378 (7%)

Query: 5   PAFPHNSSVPRAASSSPGVPNFQTSSPSSASQDLMTSTENGQDTKPMA-SMLQPPLGPVH 63
           P+FPH  +V R A+ +  +P+ QTSS S  SQD++++ EN  D KP+  S + PPL    
Sbjct: 198 PSFPHIPAVARPATQA--IPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRTGP 255

Query: 64  PAQVNVNSWNNLSQAPQVMNSAALSGGTSMGLPSMGQTPVAMHMSNMISSGMASSVPAAQ 123
           P   NVN  NNLSQ  QVM+SAAL+G  S    S+GQ+ VAMHMSNMIS+GMA+S+P +Q
Sbjct: 256 PGGANVNLLNNLSQVRQVMSSAALAGAAS----SVGQSAVAMHMSNMISTGMATSLPPSQ 311

Query: 124 NAFXXXXXXXXXXXXXXXLIAPAQVGQXXXXXXXXXXXXXXXXXXXXGISQPLSNLQGAV 183
             F               L+  AQ GQ                    G+SQP+       
Sbjct: 312 TVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ------ 365

Query: 184 SMGQRVPGMSQGNISGAQVVQGRVTMNQN----VGPSVVSSGNGTMIPTPGMSLQVQSGV 239
                  GM+QG+ SGA ++QG ++MNQN    +G   VSSG G M+PTPG+  Q QSG+
Sbjct: 366 -------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGI 417

Query: 240 QPLG--NNAAPKMTLPQQTSGGMQPTQSKYIKIWEGSLCGIKQEQPVFITKLEGYRNVSA 297
           Q LG  N++AP M L Q +SG MQ +QSKY+K+WEG+L G +Q QPV IT+LEGYR+ SA
Sbjct: 418 QQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASA 477

Query: 298 PETIAENWPPVMQMVRLIPQDHMNDEHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVIPL 357
            +++A NWPP MQ+VRLI QDHMN++ +VGKADF+VFR M+ H F GQLQ+KKLCAVI L
Sbjct: 478 SDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQL 537

Query: 358 PSQTLLLSISNKASRLIG 375
           PSQTLLLS+S+KA RLIG
Sbjct: 538 PSQTLLLSVSDKACRLIG 555


>AT1G25540.1 | Symbols: PFT1 | phytochrome and flowering time
           regulatory protein (PFT1) | chr1:8969392-8974446 REVERSE
           LENGTH=836
          Length = 836

 Score =  305 bits (782), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 191/378 (50%), Positives = 246/378 (65%), Gaps = 27/378 (7%)

Query: 5   PAFPHNSSVPRAASSSPGVPNFQTSSPSSASQDLMTSTENGQDTKPMA-SMLQPPLGPVH 63
           P+FPH  +V R A+ +  +P+ QTSS S  SQD++++ EN  D KP+  S + PPL    
Sbjct: 307 PSFPHIPAVARPATQA--IPSIQTSSASPVSQDMVSNAENAPDIKPVVVSGMTPPLRTGP 364

Query: 64  PAQVNVNSWNNLSQAPQVMNSAALSGGTSMGLPSMGQTPVAMHMSNMISSGMASSVPAAQ 123
           P   NVN  NNLSQ  QVM+SAAL+G  S    S+GQ+ VAMHMSNMIS+GMA+S+P +Q
Sbjct: 365 PGGANVNLLNNLSQVRQVMSSAALAGAAS----SVGQSAVAMHMSNMISTGMATSLPPSQ 420

Query: 124 NAFXXXXXXXXXXXXXXXLIAPAQVGQXXXXXXXXXXXXXXXXXXXXGISQPLSNLQGAV 183
             F               L+  AQ GQ                    G+SQP+       
Sbjct: 421 TVFSTGQQGITSMAGSGALMGSAQTGQSPGPNNAFSPQTTSNVASNLGVSQPMQ------ 474

Query: 184 SMGQRVPGMSQGNISGAQVVQGRVTMNQN----VGPSVVSSGNGTMIPTPGMSLQVQSGV 239
                  GM+QG+ SGA ++QG ++MNQN    +G   VSSG G M+PTPG+  Q QSG+
Sbjct: 475 -------GMNQGSHSGA-MMQGGISMNQNMMSGLGQGNVSSGTGGMMPTPGVGQQAQSGI 526

Query: 240 QPLG--NNAAPKMTLPQQTSGGMQPTQSKYIKIWEGSLCGIKQEQPVFITKLEGYRNVSA 297
           Q LG  N++AP M L Q +SG MQ +QSKY+K+WEG+L G +Q QPV IT+LEGYR+ SA
Sbjct: 527 QQLGGSNSSAPNMQLSQPSSGAMQTSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASA 586

Query: 298 PETIAENWPPVMQMVRLIPQDHMNDEHFVGKADFVVFRVMNPHRFFGQLQEKKLCAVIPL 357
            +++A NWPP MQ+VRLI QDHMN++ +VGKADF+VFR M+ H F GQLQ+KKLCAVI L
Sbjct: 587 SDSLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQL 646

Query: 358 PSQTLLLSISNKASRLIG 375
           PSQTLLLS+S+KA RLIG
Sbjct: 647 PSQTLLLSVSDKACRLIG 664