Miyakogusa Predicted Gene

Lj0g3v0328469.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0328469.1 tr|D8QY72|D8QY72_SELML Cytosine-specific
methyltransferase OS=Selaginella moellendorffii
GN=MET1-1_2,45.71,5e-19,seg,NULL; DNA (CYTOSINE-5)-METHYLTRANSFERASE 1
(DNMT1),NULL; CYTOSINE-SPECIFIC METHYLTRANSFERASE,C-5,CUFF.22358.1
         (159 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 | chr4:814...   166   5e-42
AT4G14140.1 | Symbols: MET2, DMT02, DMT2, MET02 | DNA methyltran...   166   5e-42
AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 | met...   162   7e-41
AT4G08990.1 | Symbols:  | DNA (cytosine-5-)-methyltransferase fa...   157   2e-39
AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransfera...    70   6e-13

>AT4G14140.2 | Symbols: DMT2 | DNA methyltransferase 2 |
           chr4:8146345-8152131 FORWARD LENGTH=1545
          Length = 1545

 Score =  166 bits (421), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 106/141 (75%), Gaps = 6/141 (4%)

Query: 23  RNPKQAVSCDNLKERSISTSKKSCLTEIKKDQVVEEEL-AVRLTSD---QDDGRPNRRIT 78
           R PK+A +C N KE+S+  S KS   E KK+Q++ EE+ A++LTS     DD RPNRR+T
Sbjct: 25  RRPKRAAACTNFKEKSLRISDKSETVEAKKEQILAEEIVAIQLTSSLESNDDPRPNRRLT 84

Query: 79  DFVLHDESGTGQPLEMLEVKDLFISGVILPLEVSTEKKKEKRIRCEGFGRIESWDISGYE 138
           DFVLHD  G  QP+EMLE+ D+FI GV+LPL    EKK+EK +R + FGR+E+W+ISGYE
Sbjct: 85  DFVLHDSEGVPQPVEMLELGDIFIEGVVLPL--GDEKKEEKGVRFQSFGRVENWNISGYE 142

Query: 139 DGSPVIWLSIDMADYECFKPA 159
           DGSPVIW+S  +ADY+C KP+
Sbjct: 143 DGSPVIWISTALADYDCRKPS 163


>AT4G14140.1 | Symbols: MET2, DMT02, DMT2, MET02 | DNA
           methyltransferase 2 | chr4:8146345-8152131 FORWARD
           LENGTH=1519
          Length = 1519

 Score =  166 bits (421), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/141 (57%), Positives = 106/141 (75%), Gaps = 6/141 (4%)

Query: 23  RNPKQAVSCDNLKERSISTSKKSCLTEIKKDQVVEEEL-AVRLTSD---QDDGRPNRRIT 78
           R PK+A +C N KE+S+  S KS   E KK+Q++ EE+ A++LTS     DD RPNRR+T
Sbjct: 25  RRPKRAAACTNFKEKSLRISDKSETVEAKKEQILAEEIVAIQLTSSLESNDDPRPNRRLT 84

Query: 79  DFVLHDESGTGQPLEMLEVKDLFISGVILPLEVSTEKKKEKRIRCEGFGRIESWDISGYE 138
           DFVLHD  G  QP+EMLE+ D+FI GV+LPL    EKK+EK +R + FGR+E+W+ISGYE
Sbjct: 85  DFVLHDSEGVPQPVEMLELGDIFIEGVVLPL--GDEKKEEKGVRFQSFGRVENWNISGYE 142

Query: 139 DGSPVIWLSIDMADYECFKPA 159
           DGSPVIW+S  +ADY+C KP+
Sbjct: 143 DGSPVIWISTALADYDCRKPS 163


>AT5G49160.1 | Symbols: MET1, MET2, METI, DDM2, DMT01, DMT1 |
           methyltransferase 1 | chr5:19932501-19938186 FORWARD
           LENGTH=1534
          Length = 1534

 Score =  162 bits (411), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 78/132 (59%), Positives = 99/132 (75%), Gaps = 3/132 (2%)

Query: 31  CDNLKERSISTSKKSCLTEIKKDQVVEEE-LAVRLTSDQDD--GRPNRRITDFVLHDESG 87
           C + KE+SI   +KS   E+KK Q+VEEE LA+RLT+ + D   RP RR+ DFVL D  G
Sbjct: 37  CTSFKEKSIRVCEKSATIEVKKQQIVEEEFLALRLTALETDVEDRPTRRLNDFVLFDSDG 96

Query: 88  TGQPLEMLEVKDLFISGVILPLEVSTEKKKEKRIRCEGFGRIESWDISGYEDGSPVIWLS 147
             QPLEMLE+ D+F+SG ILP +V T+K+KEK +RC  FGR+E W ISGYEDGSPVIW+S
Sbjct: 97  VPQPLEMLEIHDIFVSGAILPSDVCTDKEKEKGVRCTSFGRVEHWSISGYEDGSPVIWIS 156

Query: 148 IDMADYECFKPA 159
            ++ADY+C KPA
Sbjct: 157 TELADYDCRKPA 168


>AT4G08990.1 | Symbols:  | DNA (cytosine-5-)-methyltransferase
           family protein | chr4:5764781-5770496 FORWARD
           LENGTH=1512
          Length = 1512

 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 103/141 (73%), Gaps = 6/141 (4%)

Query: 23  RNPKQAVSCDNLKERSISTSKKSCLTEIKKDQ-VVEEELAVRLTSD---QDDGRPNRRIT 78
           R PK+A +C N KE+ +  S KS   E KK+Q VVEE +A++LTS     DD RPNRR+T
Sbjct: 23  RRPKRAAACRNFKEKPLRISDKSETVEAKKEQNVVEEIVAIQLTSSLESNDDPRPNRRLT 82

Query: 79  DFVLHDESGTGQPLEMLEVKDLFISGVILPLEVSTEKKKEKRIRCEGFGRIESWDISGYE 138
           DFVLH+  G  QP+EMLE+ D+F+ GV+LPL    +K +EK +R + FGR+E+W+ISGYE
Sbjct: 83  DFVLHNSDGVPQPVEMLELGDIFLEGVVLPL--GDDKNEEKGVRFQSFGRVENWNISGYE 140

Query: 139 DGSPVIWLSIDMADYECFKPA 159
           DGSP IW+S  +ADY+C KPA
Sbjct: 141 DGSPGIWISTALADYDCRKPA 161


>AT4G13610.1 | Symbols: MEE57 | DNA (cytosine-5-)-methyltransferase
           family protein | chr4:7915022-7921231 FORWARD
           LENGTH=1404
          Length = 1404

 Score = 70.1 bits (170), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 40/49 (81%)

Query: 111 VSTEKKKEKRIRCEGFGRIESWDISGYEDGSPVIWLSIDMADYECFKPA 159
           V  ++K+EK +R + FGR+E+W ISGYEDGSPVIW+S  +ADY+C KP+
Sbjct: 56  VGDDEKEEKGVRFQSFGRVENWTISGYEDGSPVIWISTVIADYDCRKPS 104