Miyakogusa Predicted Gene
- Lj0g3v0328439.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0328439.2 tr|G7J381|G7J381_MEDTR LMBR1 domain-containing
protein-like protein OS=Medicago truncatula GN=MTR_3g,82.5,0,seg,NULL;
LMBR1,LMBR1-like membrane protein; UNCHARACTERIZED,NULL;
coiled-coil,NULL,CUFF.22369.2
(554 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65290.1 | Symbols: | LMBR1-like membrane protein | chr5:260... 760 0.0
AT5G65290.2 | Symbols: | LMBR1-like membrane protein | chr5:260... 632 0.0
>AT5G65290.1 | Symbols: | LMBR1-like membrane protein |
chr5:26089814-26094337 FORWARD LENGTH=733
Length = 733
Score = 760 bits (1963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/589 (66%), Positives = 458/589 (77%), Gaps = 41/589 (6%)
Query: 1 MACSNTFGLVTGAFLLGFGLSEIPKSIWRNAEWTTRQKVLSHKISQMAVKLDDAHQELSN 60
MACSNTFGLVTGAFLLGFGLSEIPK++W+NA+WTTRQKVLSHKI+++AVKLD+AHQELSN
Sbjct: 148 MACSNTFGLVTGAFLLGFGLSEIPKTLWKNADWTTRQKVLSHKIAKIAVKLDNAHQELSN 207
Query: 61 AIVVAQATSKQMSKRDPLRRYMDVIDDMLAQMFREDPSFKPQGGQLGENDMDYDTDEKSM 120
AIVVAQATS QMSKRDP+R YM+VID MLA+MFREDPSFKPQGGQLGENDMDYDTDEKSM
Sbjct: 208 AIVVAQATSTQMSKRDPMRPYMNVIDAMLAKMFREDPSFKPQGGQLGENDMDYDTDEKSM 267
Query: 121 ATLRRHLRKAREEYYRYKSEYMTYVLEALELEDTMNNYERRKSTGWEYNSSIRPARTGKL 180
ATLRRHLR A++EYYRYKSEY+TYV EAL LEDTM NYERR +TGW+Y SS R RTGK+
Sbjct: 268 ATLRRHLRNAKDEYYRYKSEYLTYVTEALVLEDTMKNYERRDATGWKYISSFRATRTGKM 327
Query: 181 GSVFDTLEFCWRCILRKQVEKGLAVLLGIMSVAILLAEAT-LLPSFDLSLFSILIKSVRT 239
G++ D+LEF WRCIL+KQ++ LAV++GIMS AILLAEAT LL DLSLFSILI SV++
Sbjct: 328 GNLLDSLEFMWRCILKKQIQMVLAVVMGIMSAAILLAEATLLLSKLDLSLFSILISSVKS 387
Query: 240 QEMLVQVFAFVPLMYMCMCTYYSLFKIGMLMFYSLTPRQTSSVNLLMICSMVARYAPPVS 299
E+LVQ FAFVPL+YMC+CTYYSLFKIGMLM YSLTPRQTSSVNLLMICSM+ARYAPP+S
Sbjct: 388 DELLVQAFAFVPLVYMCVCTYYSLFKIGMLMIYSLTPRQTSSVNLLMICSMIARYAPPIS 447
Query: 300 YNFLNLIRLGSNKTTIFEKRMGNIDNAVPFFGDKFNKIYPLIMVTYTLLVASNFFDRVFD 359
YNF+NLI+L S TIFEK+MG ID+AVP FG +FN+IYPLIMV YTLLVASNFFDR+F+
Sbjct: 448 YNFINLIQLHSE--TIFEKKMGRIDDAVPVFGQRFNEIYPLIMVIYTLLVASNFFDRIFN 505
Query: 360 FLGSWKRYIFKTEDDDMDGLDPSGVIILQRERSWLEQGHKVGEQVVPLARNFNGVDIESA 419
+ GSWKR+ F+TE +D DG DPSG++IL++ER+WLE+G KVGE V+PLARNFN VDIE
Sbjct: 506 YFGSWKRFRFQTETEDTDGFDPSGLMILKKERTWLEEGQKVGEHVLPLARNFNDVDIEPG 565
Query: 420 NNLMER-HVEMKTNSDVITEETNGLSKSSREETSR-YGS-------------------SP 458
+N E VEMK +S + G SS+++ SR YGS SP
Sbjct: 566 SNFSENSSVEMKMSSSYDIDTLKG--SSSKDDMSRKYGSAREAITNKYAAIREQQNKHSP 623
Query: 459 ASKRKAEEKNEASANSVLDKGSNSG-------GAPSSGLASTWLNMKTGFQSFKANIGAK 511
+S K E N ASA L + NSG G PSS LASTW NMK G QSFK N+ K
Sbjct: 624 SSMTKPE--NMASAKVSLLETDNSGPSNGQGSGEPSSRLASTWRNMKLGIQSFKENVATK 681
Query: 512 KFLPIRQ------IQXXXXXXXXXXXXLDEIFQRLKGTSLDQNTYNEED 554
KFLP+RQ + LDEIFQRLK S++ + Y ++D
Sbjct: 682 KFLPLRQSPETTALTSTRVVTSSVPQSLDEIFQRLKNRSVEHSPYLDDD 730
>AT5G65290.2 | Symbols: | LMBR1-like membrane protein |
chr5:26089814-26093617 FORWARD LENGTH=548
Length = 548
Score = 632 bits (1631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/393 (77%), Positives = 354/393 (90%), Gaps = 3/393 (0%)
Query: 1 MACSNTFGLVTGAFLLGFGLSEIPKSIWRNAEWTTRQKVLSHKISQMAVKLDDAHQELSN 60
MACSNTFGLVTGAFLLGFGLSEIPK++W+NA+WTTRQKVLSHKI+++AVKLD+AHQELSN
Sbjct: 148 MACSNTFGLVTGAFLLGFGLSEIPKTLWKNADWTTRQKVLSHKIAKIAVKLDNAHQELSN 207
Query: 61 AIVVAQATSKQMSKRDPLRRYMDVIDDMLAQMFREDPSFKPQGGQLGENDMDYDTDEKSM 120
AIVVAQATS QMSKRDP+R YM+VID MLA+MFREDPSFKPQGGQLGENDMDYDTDEKSM
Sbjct: 208 AIVVAQATSTQMSKRDPMRPYMNVIDAMLAKMFREDPSFKPQGGQLGENDMDYDTDEKSM 267
Query: 121 ATLRRHLRKAREEYYRYKSEYMTYVLEALELEDTMNNYERRKSTGWEYNSSIRPARTGKL 180
ATLRRHLR A++EYYRYKSEY+TYV EAL LEDTM NYERR +TGW+Y SS R RTGK+
Sbjct: 268 ATLRRHLRNAKDEYYRYKSEYLTYVTEALVLEDTMKNYERRDATGWKYISSFRATRTGKM 327
Query: 181 GSVFDTLEFCWRCILRKQVEKGLAVLLGIMSVAILLAEAT-LLPSFDLSLFSILIKSVRT 239
G++ D+LEF WRCIL+KQ++ LAV++GIMS AILLAEAT LL DLSLFSILI SV++
Sbjct: 328 GNLLDSLEFMWRCILKKQIQMVLAVVMGIMSAAILLAEATLLLSKLDLSLFSILISSVKS 387
Query: 240 QEMLVQVFAFVPLMYMCMCTYYSLFKIGMLMFYSLTPRQTSSVNLLMICSMVARYAPPVS 299
E+LVQ FAFVPL+YMC+CTYYSLFKIGMLM YSLTPRQTSSVNLLMICSM+ARYAPP+S
Sbjct: 388 DELLVQAFAFVPLVYMCVCTYYSLFKIGMLMIYSLTPRQTSSVNLLMICSMIARYAPPIS 447
Query: 300 YNFLNLIRLGSNKTTIFEKRMGNIDNAVPFFGDKFNKIYPLIMVTYTLLVASNFFDRVFD 359
YNF+NLI+L S TIFEK+MG ID+AVP FG +FN+IYPLIMV YTLLVASNFFDR+F+
Sbjct: 448 YNFINLIQLHSE--TIFEKKMGRIDDAVPVFGQRFNEIYPLIMVIYTLLVASNFFDRIFN 505
Query: 360 FLGSWKRYIFKTEDDDMDGLDPSGVIILQRERS 392
+ GSWKR+ F+TE +D DG DPSG++IL++ ++
Sbjct: 506 YFGSWKRFRFQTETEDTDGFDPSGLMILKKGKN 538