Miyakogusa Predicted Gene

Lj0g3v0328439.2
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0328439.2 tr|G7J381|G7J381_MEDTR LMBR1 domain-containing
protein-like protein OS=Medicago truncatula GN=MTR_3g,82.5,0,seg,NULL;
LMBR1,LMBR1-like membrane protein; UNCHARACTERIZED,NULL;
coiled-coil,NULL,CUFF.22369.2
         (554 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65290.1 | Symbols:  | LMBR1-like membrane protein | chr5:260...   760   0.0  
AT5G65290.2 | Symbols:  | LMBR1-like membrane protein | chr5:260...   632   0.0  

>AT5G65290.1 | Symbols:  | LMBR1-like membrane protein |
           chr5:26089814-26094337 FORWARD LENGTH=733
          Length = 733

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/589 (66%), Positives = 458/589 (77%), Gaps = 41/589 (6%)

Query: 1   MACSNTFGLVTGAFLLGFGLSEIPKSIWRNAEWTTRQKVLSHKISQMAVKLDDAHQELSN 60
           MACSNTFGLVTGAFLLGFGLSEIPK++W+NA+WTTRQKVLSHKI+++AVKLD+AHQELSN
Sbjct: 148 MACSNTFGLVTGAFLLGFGLSEIPKTLWKNADWTTRQKVLSHKIAKIAVKLDNAHQELSN 207

Query: 61  AIVVAQATSKQMSKRDPLRRYMDVIDDMLAQMFREDPSFKPQGGQLGENDMDYDTDEKSM 120
           AIVVAQATS QMSKRDP+R YM+VID MLA+MFREDPSFKPQGGQLGENDMDYDTDEKSM
Sbjct: 208 AIVVAQATSTQMSKRDPMRPYMNVIDAMLAKMFREDPSFKPQGGQLGENDMDYDTDEKSM 267

Query: 121 ATLRRHLRKAREEYYRYKSEYMTYVLEALELEDTMNNYERRKSTGWEYNSSIRPARTGKL 180
           ATLRRHLR A++EYYRYKSEY+TYV EAL LEDTM NYERR +TGW+Y SS R  RTGK+
Sbjct: 268 ATLRRHLRNAKDEYYRYKSEYLTYVTEALVLEDTMKNYERRDATGWKYISSFRATRTGKM 327

Query: 181 GSVFDTLEFCWRCILRKQVEKGLAVLLGIMSVAILLAEAT-LLPSFDLSLFSILIKSVRT 239
           G++ D+LEF WRCIL+KQ++  LAV++GIMS AILLAEAT LL   DLSLFSILI SV++
Sbjct: 328 GNLLDSLEFMWRCILKKQIQMVLAVVMGIMSAAILLAEATLLLSKLDLSLFSILISSVKS 387

Query: 240 QEMLVQVFAFVPLMYMCMCTYYSLFKIGMLMFYSLTPRQTSSVNLLMICSMVARYAPPVS 299
            E+LVQ FAFVPL+YMC+CTYYSLFKIGMLM YSLTPRQTSSVNLLMICSM+ARYAPP+S
Sbjct: 388 DELLVQAFAFVPLVYMCVCTYYSLFKIGMLMIYSLTPRQTSSVNLLMICSMIARYAPPIS 447

Query: 300 YNFLNLIRLGSNKTTIFEKRMGNIDNAVPFFGDKFNKIYPLIMVTYTLLVASNFFDRVFD 359
           YNF+NLI+L S   TIFEK+MG ID+AVP FG +FN+IYPLIMV YTLLVASNFFDR+F+
Sbjct: 448 YNFINLIQLHSE--TIFEKKMGRIDDAVPVFGQRFNEIYPLIMVIYTLLVASNFFDRIFN 505

Query: 360 FLGSWKRYIFKTEDDDMDGLDPSGVIILQRERSWLEQGHKVGEQVVPLARNFNGVDIESA 419
           + GSWKR+ F+TE +D DG DPSG++IL++ER+WLE+G KVGE V+PLARNFN VDIE  
Sbjct: 506 YFGSWKRFRFQTETEDTDGFDPSGLMILKKERTWLEEGQKVGEHVLPLARNFNDVDIEPG 565

Query: 420 NNLMER-HVEMKTNSDVITEETNGLSKSSREETSR-YGS-------------------SP 458
           +N  E   VEMK +S    +   G   SS+++ SR YGS                   SP
Sbjct: 566 SNFSENSSVEMKMSSSYDIDTLKG--SSSKDDMSRKYGSAREAITNKYAAIREQQNKHSP 623

Query: 459 ASKRKAEEKNEASANSVLDKGSNSG-------GAPSSGLASTWLNMKTGFQSFKANIGAK 511
           +S  K E  N ASA   L +  NSG       G PSS LASTW NMK G QSFK N+  K
Sbjct: 624 SSMTKPE--NMASAKVSLLETDNSGPSNGQGSGEPSSRLASTWRNMKLGIQSFKENVATK 681

Query: 512 KFLPIRQ------IQXXXXXXXXXXXXLDEIFQRLKGTSLDQNTYNEED 554
           KFLP+RQ      +             LDEIFQRLK  S++ + Y ++D
Sbjct: 682 KFLPLRQSPETTALTSTRVVTSSVPQSLDEIFQRLKNRSVEHSPYLDDD 730


>AT5G65290.2 | Symbols:  | LMBR1-like membrane protein |
           chr5:26089814-26093617 FORWARD LENGTH=548
          Length = 548

 Score =  632 bits (1631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 304/393 (77%), Positives = 354/393 (90%), Gaps = 3/393 (0%)

Query: 1   MACSNTFGLVTGAFLLGFGLSEIPKSIWRNAEWTTRQKVLSHKISQMAVKLDDAHQELSN 60
           MACSNTFGLVTGAFLLGFGLSEIPK++W+NA+WTTRQKVLSHKI+++AVKLD+AHQELSN
Sbjct: 148 MACSNTFGLVTGAFLLGFGLSEIPKTLWKNADWTTRQKVLSHKIAKIAVKLDNAHQELSN 207

Query: 61  AIVVAQATSKQMSKRDPLRRYMDVIDDMLAQMFREDPSFKPQGGQLGENDMDYDTDEKSM 120
           AIVVAQATS QMSKRDP+R YM+VID MLA+MFREDPSFKPQGGQLGENDMDYDTDEKSM
Sbjct: 208 AIVVAQATSTQMSKRDPMRPYMNVIDAMLAKMFREDPSFKPQGGQLGENDMDYDTDEKSM 267

Query: 121 ATLRRHLRKAREEYYRYKSEYMTYVLEALELEDTMNNYERRKSTGWEYNSSIRPARTGKL 180
           ATLRRHLR A++EYYRYKSEY+TYV EAL LEDTM NYERR +TGW+Y SS R  RTGK+
Sbjct: 268 ATLRRHLRNAKDEYYRYKSEYLTYVTEALVLEDTMKNYERRDATGWKYISSFRATRTGKM 327

Query: 181 GSVFDTLEFCWRCILRKQVEKGLAVLLGIMSVAILLAEAT-LLPSFDLSLFSILIKSVRT 239
           G++ D+LEF WRCIL+KQ++  LAV++GIMS AILLAEAT LL   DLSLFSILI SV++
Sbjct: 328 GNLLDSLEFMWRCILKKQIQMVLAVVMGIMSAAILLAEATLLLSKLDLSLFSILISSVKS 387

Query: 240 QEMLVQVFAFVPLMYMCMCTYYSLFKIGMLMFYSLTPRQTSSVNLLMICSMVARYAPPVS 299
            E+LVQ FAFVPL+YMC+CTYYSLFKIGMLM YSLTPRQTSSVNLLMICSM+ARYAPP+S
Sbjct: 388 DELLVQAFAFVPLVYMCVCTYYSLFKIGMLMIYSLTPRQTSSVNLLMICSMIARYAPPIS 447

Query: 300 YNFLNLIRLGSNKTTIFEKRMGNIDNAVPFFGDKFNKIYPLIMVTYTLLVASNFFDRVFD 359
           YNF+NLI+L S   TIFEK+MG ID+AVP FG +FN+IYPLIMV YTLLVASNFFDR+F+
Sbjct: 448 YNFINLIQLHSE--TIFEKKMGRIDDAVPVFGQRFNEIYPLIMVIYTLLVASNFFDRIFN 505

Query: 360 FLGSWKRYIFKTEDDDMDGLDPSGVIILQRERS 392
           + GSWKR+ F+TE +D DG DPSG++IL++ ++
Sbjct: 506 YFGSWKRFRFQTETEDTDGFDPSGLMILKKGKN 538