Miyakogusa Predicted Gene

Lj0g3v0328009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0328009.1 tr|B9IFA6|B9IFA6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_666660 PE=4 SV=1,60,0.0001,
,CUFF.22323.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    51   2e-07

>AT5G50390.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:20520789-20522980 REVERSE
           LENGTH=701
          Length = 701

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 28/30 (93%)

Query: 1   MRNKILLIHVRCGLILDARKLFDDIPEKGL 30
           M N+ILL+HV+CG+I+DAR+LFD+IPE+ L
Sbjct: 160 MMNRILLMHVKCGMIIDARRLFDEIPERNL 189