Miyakogusa Predicted Gene

Lj0g3v0327989.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327989.1 tr|B9HVS3|B9HVS3_POPTR Cytokinin receptor 1B
OS=Populus trichocarpa GN=CRE1B PE=2
SV=1,50,2e-19,coiled-coil,NULL,gene.g25597.t1.1
         (106 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27320.1 | Symbols: AHK3, HK3 | histidine kinase 3 | chr1:948...   116   3e-27
AT5G35750.1 | Symbols: AHK2, HK2 | histidine kinase 2 | chr5:139...   100   1e-22
AT2G01830.1 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE dom...    93   4e-20
AT2G01830.3 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE dom...    93   4e-20
AT2G01830.2 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE dom...    93   4e-20

>AT1G27320.1 | Symbols: AHK3, HK3 | histidine kinase 3 |
           chr1:9487780-9492027 FORWARD LENGTH=1036
          Length = 1036

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/99 (59%), Positives = 71/99 (71%)

Query: 1   MYGSNVSGDVFYHVRTLNFGDPFRKHEMRYRFKQIPPFPWLAITTSIGFFVIALLLAQIS 60
           MYG+NVS D    V  L FGDP RKHEMR RFKQ PP+P L++ TS G  VIALL+A I 
Sbjct: 361 MYGTNVSADGLERVSPLIFGDPLRKHEMRCRFKQKPPWPVLSMVTSFGILVIALLVAHII 420

Query: 61  YASVLHIAKVEEDYREMMELKERAEAADVAKSQLSCYLS 99
           +A+V  I KVEED  +M +LK++AEAADVAKSQ    +S
Sbjct: 421 HATVSRIHKVEEDCDKMKQLKKKAEAADVAKSQFLATVS 459


>AT5G35750.1 | Symbols: AHK2, HK2 | histidine kinase 2 |
           chr5:13911743-13916337 REVERSE LENGTH=1176
          Length = 1176

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 60/93 (64%)

Query: 1   MYGSNVSGDVFYHVRTLNFGDPFRKHEMRYRFKQIPPFPWLAITTSIGFFVIALLLAQIS 60
           MYGS +      H+ +L+FGDP R HEM  RFK   P PW AIT SI   VI  L+  I 
Sbjct: 498 MYGSEIGDISEQHISSLDFGDPSRNHEMHCRFKHKLPIPWTAITPSILVLVITFLVGYIL 557

Query: 61  YASVLHIAKVEEDYREMMELKERAEAADVAKSQ 93
           Y ++  IA VEED ++M ELK RAEAAD+AKSQ
Sbjct: 558 YEAINRIATVEEDCQKMRELKARAEAADIAKSQ 590


>AT2G01830.1 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain
           containing histidine kinase protein | chr2:363332-367429
           REVERSE LENGTH=1057
          Length = 1057

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 56/87 (64%)

Query: 13  HVRTLNFGDPFRKHEMRYRFKQIPPFPWLAITTSIGFFVIALLLAQISYASVLHIAKVEE 72
           H   L+FGDPFRKH+M  R+ Q  P P   +TT   FF I  L+  I Y + +HI KVE+
Sbjct: 372 HESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVED 431

Query: 73  DYREMMELKERAEAADVAKSQLSCYLS 99
           D+ EM ELK RAEAADVAKSQ    +S
Sbjct: 432 DFHEMQELKVRAEAADVAKSQFLATVS 458


>AT2G01830.3 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain
           containing histidine kinase protein | chr2:363332-367429
           REVERSE LENGTH=1057
          Length = 1057

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 56/87 (64%)

Query: 13  HVRTLNFGDPFRKHEMRYRFKQIPPFPWLAITTSIGFFVIALLLAQISYASVLHIAKVEE 72
           H   L+FGDPFRKH+M  R+ Q  P P   +TT   FF I  L+  I Y + +HI KVE+
Sbjct: 372 HESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVED 431

Query: 73  DYREMMELKERAEAADVAKSQLSCYLS 99
           D+ EM ELK RAEAADVAKSQ    +S
Sbjct: 432 DFHEMQELKVRAEAADVAKSQFLATVS 458


>AT2G01830.2 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain
           containing histidine kinase protein | chr2:363332-368016
           REVERSE LENGTH=1080
          Length = 1080

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 56/87 (64%)

Query: 13  HVRTLNFGDPFRKHEMRYRFKQIPPFPWLAITTSIGFFVIALLLAQISYASVLHIAKVEE 72
           H   L+FGDPFRKH+M  R+ Q  P P   +TT   FF I  L+  I Y + +HI KVE+
Sbjct: 395 HESKLDFGDPFRKHKMICRYHQKAPIPLNVLTTVPLFFAIGFLVGYILYGAAMHIVKVED 454

Query: 73  DYREMMELKERAEAADVAKSQLSCYLS 99
           D+ EM ELK RAEAADVAKSQ    +S
Sbjct: 455 DFHEMQELKVRAEAADVAKSQFLATVS 481