Miyakogusa Predicted Gene

Lj0g3v0327639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327639.1 Non Chatacterized Hit- tr|K3X0Z8|K3X0Z8_PYTUL
Uncharacterized protein OS=Pythium ultimum
GN=PYU1_G01,29.63,1e-18,seg,NULL; "Winged helix" DNA-binding
domain,NULL; Rap30/74 interaction domains,Transcription Factor
,CUFF.22304.1
         (263 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52270.1 | Symbols:  | Transcription initiation factor IIF, b...   310   5e-85
AT1G75510.1 | Symbols:  | Transcription initiation factor IIF, b...   291   3e-79

>AT3G52270.1 | Symbols:  | Transcription initiation factor IIF, beta
           subunit | chr3:19387180-19388902 REVERSE LENGTH=269
          Length = 269

 Score =  310 bits (795), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/251 (62%), Positives = 192/251 (76%), Gaps = 12/251 (4%)

Query: 19  NGHVDTSKSDRAVWLMKCPPLVSRSLYAPP--------SDPSRPVAKVVVSIDPLXXXXX 70
           N  ++T  ++R++ LMK P LV+ SL +           DP RP AKV++ +DPL     
Sbjct: 20  NEALETGLAERSMLLMKAPSLVASSLQSHSFPDDPYRPDDPYRPDAKVILGVDPLAHEDE 79

Query: 71  XXXPQFTMELAGTESGNIPKCYAMDMSKDFIPMSVFSDTQQGKISVEGKILNKFDMRPHN 130
               QF MELA  +SGN+P+ Y +DMSKDFIPM+VF ++  GK+SVEGKI NKFDMRPHN
Sbjct: 80  GT--QFVMELARADSGNMPRRYTLDMSKDFIPMNVFCESSDGKMSVEGKIKNKFDMRPHN 137

Query: 131 QSLELYGKLCRERTNKYMVKNRQIQVIDNDTGAHMRPMPGMISFSVSGPTDKKKTQAKTT 190
           +++E YG+LCRERTNKYM KNRQIQVIDN  G HMRPMPGMI    + P +KKK   +T+
Sbjct: 138 ENIESYGRLCRERTNKYMGKNRQIQVIDNARGMHMRPMPGMI-IPTAAP-EKKKLTNRTS 195

Query: 191 EMKRTRRDRGEMEEIVFKLFERQPNWSLRNLIQETDQPEQFLKDILKDLCVYNNKGTNQG 250
           EMKRTRRDR EMEE++F LFERQ NW+LR LIQETDQPEQFLKD+LKDLC+YNNKG+NQG
Sbjct: 196 EMKRTRRDRREMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKGSNQG 255

Query: 251 TYELKPEYRKS 261
           TYELKPEY+K+
Sbjct: 256 TYELKPEYKKA 266


>AT1G75510.1 | Symbols:  | Transcription initiation factor IIF, beta
           subunit | chr1:28347254-28348629 REVERSE LENGTH=261
          Length = 261

 Score =  291 bits (745), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 140/258 (54%), Positives = 183/258 (70%), Gaps = 23/258 (8%)

Query: 21  HVDTSKSDRAVWLMKCPPLVSRSLY--------------APPSDPSRPVAKVVVSIDPLX 66
           ++D  KSDR++WLMKCP +V ++ +              +PP      +AK+V  +DPL 
Sbjct: 6   NLDIEKSDRSIWLMKCPVVVDKAWHKIAASSSSSFASSDSPPD-----MAKIVREVDPLR 60

Query: 67  XXXXXXXPQFTMELAGTESGNIPKCYAMDMSKDFIPMSVFSDTQQGKISVEGKILNKFDM 126
                  P+F M + G E GN+PKCYA++M  DF+PM  FSD  QG  + EGK+ +KFDM
Sbjct: 61  DDSP---PEFKMYMVGAEYGNMPKCYALNMFTDFVPMGGFSDVNQGCAAAEGKVDHKFDM 117

Query: 127 RPHNQSLELYGKLCRERTNKYMVKNRQIQVIDNDTGAHMRPMPGMISFSVSGPTDKKK-T 185
           +P+ +++E Y +LCRERT+K MVKNRQIQVIDND G HMRPMPGM+    S   +K+K  
Sbjct: 118 KPYGETIEEYARLCRERTSKAMVKNRQIQVIDNDRGVHMRPMPGMLGLVSSNSKEKRKPP 177

Query: 186 QAKTTEMKRTRRDRGEMEEIVFKLFERQPNWSLRNLIQETDQPEQFLKDILKDLCVYNNK 245
             K TE+KRTRRDRGE+E I+FKLFE QPNW+L+ L+QETDQP QFLK+IL +LCVYN +
Sbjct: 178 PVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKR 237

Query: 246 GTNQGTYELKPEYRKSGD 263
           G+NQGTYELKPEY+KS +
Sbjct: 238 GSNQGTYELKPEYKKSAE 255