Miyakogusa Predicted Gene

Lj0g3v0327219.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327219.1 Non Chatacterized Hit- tr|G3MJK9|G3MJK9_9ACAR
Putative uncharacterized protein (Fragment)
OS=Amblyom,36.21,7e-18,REF,Rubber elongation factor,CUFF.22263.1
         (228 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67360.1 | Symbols:  | Rubber elongation factor protein (REF)...   224   4e-59
AT1G67360.2 | Symbols:  | Rubber elongation factor protein (REF)...   224   4e-59
AT3G05500.1 | Symbols:  | Rubber elongation factor protein (REF)...   135   3e-32
AT2G47780.1 | Symbols:  | Rubber elongation factor protein (REF)...   134   7e-32

>AT1G67360.1 | Symbols:  | Rubber elongation factor protein (REF) |
           chr1:25237072-25237913 REVERSE LENGTH=240
          Length = 240

 Score =  224 bits (570), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/221 (48%), Positives = 146/221 (66%), Gaps = 1/221 (0%)

Query: 9   SKNKELKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNILGPVYNNFK 68
           SK   LKHL FV+I  +     VSNLYEY K NSGPL+SA+  VEG VT ++ PVY  FK
Sbjct: 8   SKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFK 67

Query: 69  GVPNDVLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGLIQKVTQEAKKVTSEARSAGPR 128
            VP+ +L+F+D+KV EVS KFDEHAPP A+++ N A  LI K T++A+    EAR+ GP+
Sbjct: 68  DVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPK 127

Query: 129 AVVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVPTAAHWSEKYNHIIKVMAEKG 188
           A  +Y ATE K  V+   VK+W+ LN Y P H + + A+P AAH+S +YN ++  M   G
Sbjct: 128 AAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMG 187

Query: 189 YSVAGYLPLIPIDAIAKAFKQGECNL-KGNDVAASAKERSE 228
           YS+ GYLPL+P+D I KA+++ +    KG D A    E ++
Sbjct: 188 YSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTD 228


>AT1G67360.2 | Symbols:  | Rubber elongation factor protein (REF) |
           chr1:25237072-25237913 REVERSE LENGTH=240
          Length = 240

 Score =  224 bits (570), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 107/221 (48%), Positives = 146/221 (66%), Gaps = 1/221 (0%)

Query: 9   SKNKELKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNILGPVYNNFK 68
           SK   LKHL FV+I  +     VSNLYEY K NSGPL+SA+  VEG VT ++ PVY  FK
Sbjct: 8   SKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFK 67

Query: 69  GVPNDVLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGLIQKVTQEAKKVTSEARSAGPR 128
            VP+ +L+F+D+KV EVS KFDEHAPP A+++ N A  LI K T++A+    EAR+ GP+
Sbjct: 68  DVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPK 127

Query: 129 AVVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVPTAAHWSEKYNHIIKVMAEKG 188
           A  +Y ATE K  V+   VK+W+ LN Y P H + + A+P AAH+S +YN ++  M   G
Sbjct: 128 AAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMG 187

Query: 189 YSVAGYLPLIPIDAIAKAFKQGECNL-KGNDVAASAKERSE 228
           YS+ GYLPL+P+D I KA+++ +    KG D A    E ++
Sbjct: 188 YSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTD 228


>AT3G05500.1 | Symbols:  | Rubber elongation factor protein (REF) |
           chr3:1593540-1594802 FORWARD LENGTH=246
          Length = 246

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/221 (36%), Positives = 112/221 (50%), Gaps = 19/221 (8%)

Query: 6   IDKSKNKELKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNILGPVYN 65
           + K + + LK+L FV+  AV   L  + +Y   K+ SGPL+  + +VEG V  ++GPVY 
Sbjct: 14  MTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYE 73

Query: 66  NFKGVPNDVLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGLIQKVTQEAKKVTSEARSA 125
            +  VP +VL ++D KVD    + D   PP  +Q++  A    Q     A+ + SE R A
Sbjct: 74  KYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRA 133

Query: 126 G-----------------PRAVVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVP 168
           G                 P A   Y   E K     C V  W  LN  P F  +A++AVP
Sbjct: 134 GVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVP 191

Query: 169 TAAHWSEKYNHIIKVMAEKGYSVAGYLPLIPIDAIAKAFKQ 209
           TAA  SEKYN  +   AEKGY V  Y+PL+P + I+K F +
Sbjct: 192 TAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232


>AT2G47780.1 | Symbols:  | Rubber elongation factor protein (REF) |
           chr2:19570076-19570864 FORWARD LENGTH=235
          Length = 235

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 17/205 (8%)

Query: 14  LKHLGFVKIVAVRTFLFVSNLYEYTKNNSGPLRSAIGTVEGTVTNILGPVYNNFKGVPND 73
           LKHL F+++ AV      S LYE  K+N+GPL+  +  +E  V  +L P+Y  F  VP  
Sbjct: 41  LKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFK 100

Query: 74  VLIFIDNKVDEVSDKFDEHAPPFARQLANHAKGL---IQK--VTQEAKKVTSEARSAGPR 128
           +L+F+D KVD+V    + + P   +Q ++ A  +   +Q+  V    K +    R     
Sbjct: 101 LLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKYEP 160

Query: 129 AVVHYVATESKNVVLICLVKLWSGLNHYPPFHVVAEMAVPTAAHWSEKYNHIIKVMAEKG 188
           A  +Y AT            LW  LN  P F  VA + +PTA +WSEKYN  ++ + ++ 
Sbjct: 161 AAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRD 208

Query: 189 YSVAGYLPLIPIDAIAKAFKQGECN 213
           Y  A YLP+IPI+ I+   +Q +C 
Sbjct: 209 YFGAEYLPMIPIEKISDILEQDQCR 233