Miyakogusa Predicted Gene

Lj0g3v0327159.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0327159.2 Non Chatacterized Hit- tr|A2XSL3|A2XSL3_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,32.09,0.000000000000004,seg,NULL,CUFF.22256.2
         (233 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23910.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   111   4e-25
AT3G24255.2 | Symbols:  | RNA-directed DNA polymerase (reverse t...   111   5e-25
AT3G24255.1 | Symbols:  | RNA-directed DNA polymerase (reverse t...   110   6e-25

>AT3G23910.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein
           (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins
           in 147 species: Archae - 28; Bacteria - 51; Metazoa -
           157; Fungi - 82; Plants - 85; Viruses - 6; Other
           Eukaryotes - 153 (source: NCBI BLink). |
           chr3:8636594-8639344 REVERSE LENGTH=421
          Length = 421

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 94/159 (59%), Gaps = 12/159 (7%)

Query: 80  DKNLEQFVLDNKIEEMNLNIKSLEDLQCKVKWFDAVQQIEDELVGLKVLEFDENCIKLSL 139
           D   + F L+N++EE  + +KSLEDL    K FDA +Q+ED L GLKVLEFD N I+L L
Sbjct: 154 DDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQL 213

Query: 140 RTYMPTVGGSSYTERVEDSIDVRELNHELLIEV-EGNMKLKNVQVFPNDIHVNDIVDAAK 198
           RTY+  + G     + +   +  EL HELLI + +   ++   ++FPNDI++ DI++AA 
Sbjct: 214 RTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAAD 273

Query: 199 SV-----------SKFSLQWFIQKVQDRIILNKLRHLAV 226
           S            ++ S+QW + KVQD+II   LR   V
Sbjct: 274 SFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLRKYIV 312


>AT3G24255.2 | Symbols:  | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           chr3:8788949-8793208 FORWARD LENGTH=428
          Length = 428

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 12/155 (7%)

Query: 80  DKNLEQFVLDNKIEEMNLNIKSLEDLQCKVKWFDAVQQIEDELVGLKVLEFDENCIKLSL 139
           D   + F L+N++EE  + +KSLEDL    K FDA +Q+ED L GLKVLEFD N I+L L
Sbjct: 161 DDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQL 220

Query: 140 RTYMPTVGGSSYTERVEDSIDVRELNHELLIEV-EGNMKLKNVQVFPNDIHVNDIVDAAK 198
           RTY+  + G     + +   +  EL HELLI + +   ++   ++FPNDI++ DI++AA 
Sbjct: 221 RTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAAD 280

Query: 199 SV-----------SKFSLQWFIQKVQDRIILNKLR 222
           S            ++ S+QW + KVQD+II   LR
Sbjct: 281 SFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLR 315


>AT3G24255.1 | Symbols:  | RNA-directed DNA polymerase (reverse
           transcriptase)-related family protein |
           chr3:8789471-8793208 FORWARD LENGTH=746
          Length = 746

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 93/155 (60%), Gaps = 12/155 (7%)

Query: 80  DKNLEQFVLDNKIEEMNLNIKSLEDLQCKVKWFDAVQQIEDELVGLKVLEFDENCIKLSL 139
           D   + F L+N++EE  + +KSLEDL    K FDA +Q+ED L GLKVLEFD N I+L L
Sbjct: 479 DDKFKMFELENQMEEKRMILKSLEDLDSLRKRFDAAEQVEDALTGLKVLEFDGNFIRLQL 538

Query: 140 RTYMPTVGGSSYTERVEDSIDVRELNHELLIEV-EGNMKLKNVQVFPNDIHVNDIVDAAK 198
           RTY+  + G     + +   +  EL HELLI + +   ++   ++FPNDI++ DI++AA 
Sbjct: 539 RTYIQKLDGFLGQHKFDHITEPSELIHELLIYLKDKTTEITKFEMFPNDIYIGDIIEAAD 598

Query: 199 SV-----------SKFSLQWFIQKVQDRIILNKLR 222
           S            ++ S+QW + KVQD+II   LR
Sbjct: 599 SFRQVRLHSAVLDTRSSVQWVVAKVQDKIISTTLR 633