Miyakogusa Predicted Gene

Lj0g3v0326949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326949.1 tr|G7LDQ8|G7LDQ8_MEDTR Translation initiation
factor OS=Medicago truncatula GN=MTR_8g061130 PE=3
SV=,67.97,2.94273e-44,Ribosomal protein S1-like RNA-binding
domain,RNA-binding domain, S1; Nucleic acid-binding
proteins,N,CUFF.22240.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11175.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   108   1e-24

>AT4G11175.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr4:6818162-6818806 FORWARD LENGTH=141
          Length = 141

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 60/71 (84%)

Query: 63  KSSEQKWVHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRKNFVRILPGDRVKVEVSRY 122
           K    K V EGL+TESLPNGMFRV L+N D ILGY+ GKIRKNF+RILPGD+VKVE+S Y
Sbjct: 67  KEGSNKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEMSVY 126

Query: 123 DSSKGRIVYRL 133
           DS+KGRI++R+
Sbjct: 127 DSTKGRIIFRM 137