Miyakogusa Predicted Gene

Lj0g3v0326609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326609.1 tr|Q8W105|Q8W105_ARATH At1g50840/F8A12_8
OS=Arabidopsis thaliana GN=At1g50840 PE=2 SV=1,81.48,2e-19,no
description,NULL; DNA/RNA polymerases,NULL; DNA POLYMERASE
I,NULL,CUFF.22220.1
         (57 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:188...   100   3e-22
AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   100   4e-22
AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...   100   4e-22

>AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 |
            chr1:18839277-18844313 FORWARD LENGTH=1050
          Length = 1050

 Score = 99.8 bits (247), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            Q+HDEVILEGP ESAE+AK IVV+CMSKPF G+NIL+VDLSVDAKCAQNWY+ K
Sbjct: 997  QIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDLSVDAKCAQNWYAAK 1050


>AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 |
            chr3:7168261-7173357 FORWARD LENGTH=1034
          Length = 1034

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGP+ESAE AK IVV CMS+PF GKNIL+VDLSVDAKCAQNWY+GK
Sbjct: 981  QVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1034


>AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 |
            chr3:7168261-7173357 FORWARD LENGTH=1049
          Length = 1049

 Score = 99.8 bits (247), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGP+ESAE AK IVV CMS+PF GKNIL+VDLSVDAKCAQNWY+GK
Sbjct: 996  QVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1049