Miyakogusa Predicted Gene

Lj0g3v0326569.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326569.1 Non Chatacterized Hit- tr|G7K8U1|G7K8U1_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,68.49,3e-16,coiled-coil,NULL,CUFF.22222.1
         (93 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21930.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   134   1e-32
AT3G42150.3 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   131   9e-32
AT3G42150.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   131   9e-32
AT3G42150.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   131   9e-32

>AT1G21930.1 | Symbols:  | unknown protein; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G42150.3); Has 43 Blast hits to 43 proteins in
          13 species: Archae - 0; Bacteria - 0; Metazoa - 0;
          Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr1:7713466-7714298 FORWARD
          LENGTH=98
          Length = 98

 Score =  134 bits (338), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 72/82 (87%), Gaps = 2/82 (2%)

Query: 1  MGGEE--KHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 58
          MG +E  KHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQENVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 59 ISQCEREHAERQMALLEAQNSA 80
          +SQCEREHAE QM LL+   +A
Sbjct: 61 VSQCEREHAEHQMKLLQDSQNA 82


>AT3G42150.3 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: male gametophyte, pollen tube;
          EXPRESSED DURING: L mature pollen stage, M germinated
          pollen stage; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT1G21930.1); Has 35333 Blast
          hits to 34131 proteins in 2444 species: Archae - 798;
          Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
          531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
          BLink). | chr3:14310567-14311465 FORWARD LENGTH=100
          Length = 100

 Score =  131 bits (329), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 71/82 (86%), Gaps = 2/82 (2%)

Query: 1  MGGEE--KHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 58
          MG ++  KHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 59 ISQCEREHAERQMALLEAQNSA 80
          +SQCEREHAE Q  LL+   +A
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNA 82


>AT3G42150.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: male gametophyte, pollen tube;
          EXPRESSED DURING: L mature pollen stage, M germinated
          pollen stage; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT1G21930.1); Has 42 Blast
          hits to 42 proteins in 13 species: Archae - 0; Bacteria
          - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0;
          Other Eukaryotes - 0 (source: NCBI BLink). |
          chr3:14310567-14311465 FORWARD LENGTH=100
          Length = 100

 Score =  131 bits (329), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 71/82 (86%), Gaps = 2/82 (2%)

Query: 1  MGGEE--KHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 58
          MG ++  KHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 59 ISQCEREHAERQMALLEAQNSA 80
          +SQCEREHAE Q  LL+   +A
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNA 82


>AT3G42150.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: endomembrane
          system; EXPRESSED IN: male gametophyte, pollen tube;
          EXPRESSED DURING: L mature pollen stage, M germinated
          pollen stage; BEST Arabidopsis thaliana protein match
          is: unknown protein (TAIR:AT1G21930.1); Has 35333 Blast
          hits to 34131 proteins in 2444 species: Archae - 798;
          Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
          531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
          BLink). | chr3:14310567-14311465 FORWARD LENGTH=100
          Length = 100

 Score =  131 bits (329), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 62/82 (75%), Positives = 71/82 (86%), Gaps = 2/82 (2%)

Query: 1  MGGEE--KHLEDCSVSNALGTWVFSVAGALLAIPVGIKRKSLAPLVFFGTTGTMLDIIMG 58
          MG ++  KHLE+C+VSNALGTWVFSV GAL+AIPVGIKRKSL PLVFFGTTGTMLDII+G
Sbjct: 1  MGSQKNVKHLEECTVSNALGTWVFSVLGALVAIPVGIKRKSLGPLVFFGTTGTMLDIIIG 60

Query: 59 ISQCEREHAERQMALLEAQNSA 80
          +SQCEREHAE Q  LL+   +A
Sbjct: 61 VSQCEREHAEHQTKLLQDSQNA 82