Miyakogusa Predicted Gene

Lj0g3v0326369.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326369.1 Non Chatacterized Hit- tr|B9RZU0|B9RZU0_RICCO
Poly(A) polymerase, putative OS=Ricinus communis
GN=RC,62.09,0,seg,NULL; PAP/OAS1 substrate-binding domain,NULL;
PAP/Archaeal CCA-adding enzyme, C-terminal domain,,CUFF.22191.1
         (336 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:20444...   336   1e-92
AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   149   3e-36
AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase | chr4...   149   3e-36
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   149   4e-36
AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   149   4e-36
AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   149   4e-36
AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   149   4e-36
AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   149   4e-36
AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymeras...   149   4e-36
AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   148   4e-36
AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...   148   4e-36
AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   147   1e-35
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   147   1e-35
AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   147   1e-35
AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...   147   1e-35
AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   146   2e-35
AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...   146   2e-35
AT5G02670.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    52   8e-07

>AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 |
           chr3:2044443-2047034 FORWARD LENGTH=507
          Length = 507

 Score =  336 bits (861), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 173/327 (52%), Positives = 229/327 (70%), Gaps = 9/327 (2%)

Query: 1   MRNIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXX 60
           +R+ID+TSWK LSGVRANK ILQLVP++E FQS+LRC+KLWAKRR               
Sbjct: 170 LRDIDETSWKILSGVRANKCILQLVPSLELFQSLLRCVKLWAKRRGVYGNLNGFLGGVHM 229

Query: 61  AVLVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVMLQEGMLPTVVDAIETRSFMPILL 120
           A+L A+VC   P+ATL+ L+ANFF TFA W WPTPV+L E   P+          MPI L
Sbjct: 230 AILAAFVCGYQPNATLSSLLANFFYTFAHWQWPTPVVLLEDTYPSTG---APPGLMPIQL 286

Query: 121 PSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYTQFVKI 180
           P   ++YC+S IT+STFY+I AEFL GHN+T+D  K +F W  +FEL+PY+  YT F KI
Sbjct: 287 PCGSHQYCNSTITRSTFYKIVAEFLLGHNLTKDYLKLNFSWKDLFELYPYANTYTWFTKI 346

Query: 181 YLSTPDQRALGDWVGWVKSRFRGLLGILEGVQGFCDPNPTEYVDTNKTEPNVVFYWGLQH 240
           +LS  +Q  L DWVGWVKSRFR LL  +E V G CDPNPTEYV+T   +PN+VFYWGLQ 
Sbjct: 347 HLSAANQEDLSDWVGWVKSRFRCLLIKIEEVYGICDPNPTEYVETYTKQPNIVFYWGLQL 406

Query: 241 DKYNLVDIDLVEGEFMKIINNG-YEGSLGKMELSILLASQLPKNSQF--DERSVKGRKTC 297
              N+ DI+ V+ +F+K +N+G + G++G+++L+++ ASQLPKN +   + RS K  KTC
Sbjct: 407 RTINVSDIESVKIDFLKNVNSGSFRGTVGRIQLTLVKASQLPKNGECGSNNRSKKVTKTC 466

Query: 298 WRIIDYDKKRSH--VYSNHLPHCLIGH 322
           WRI + DK+ ++  VYS HLP  ++G+
Sbjct: 467 WRIRE-DKQCNNVPVYSKHLPGYVVGY 492


>AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=735
          Length = 735

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854266 FORWARD LENGTH=745
          Length = 745

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854443 FORWARD LENGTH=765
          Length = 765

 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymerase |
           chr4:15850134-15854375 FORWARD LENGTH=741
          Length = 741

 Score =  149 bits (375), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853810 FORWARD LENGTH=730
          Length = 730

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853906 FORWARD LENGTH=716
          Length = 716

 Score =  148 bits (374), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 132/247 (53%), Gaps = 11/247 (4%)

Query: 4   IDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAVL 63
           +D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+L
Sbjct: 195 VDEPTVRSLNGCRVADQILKLVPNFEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWALL 254

Query: 64  VAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRSF 115
           VA VCQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +    
Sbjct: 255 VARVCQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDELGFPVWDRRKNHRDRYHL 314

Query: 116 MPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRYT 175
           MPI+ P+ P      N+++ST   +  +F  G+NI +++      W  +FE + + + Y 
Sbjct: 315 MPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNNILQEIELNKQHWSSLFEQYMFFEAYK 374

Query: 176 QFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPNV 232
            ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT +   + 
Sbjct: 375 NYLQVDIVAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTARQFLHC 434

Query: 233 VFYWGLQ 239
            F+ GLQ
Sbjct: 435 AFFMGLQ 441


>AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=797
          Length = 797

 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 11/248 (4%)

Query: 3   NIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAV 62
           ++D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+
Sbjct: 196 DVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWAL 255

Query: 63  LVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRS 114
           LVA +CQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +   
Sbjct: 256 LVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYH 315

Query: 115 FMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRY 174
            MPI+ P+ P      N+++ST   +  +F  G+ I +++      W  +F+ + + + Y
Sbjct: 316 LMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAY 375

Query: 175 TQFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPN 231
             ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT+K   +
Sbjct: 376 KNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRH 435

Query: 232 VVFYWGLQ 239
             F+ GLQ
Sbjct: 436 CAFFMGLQ 443


>AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026123-11030440 REVERSE LENGTH=800
          Length = 800

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 11/248 (4%)

Query: 3   NIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAV 62
           ++D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+
Sbjct: 196 DVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWAL 255

Query: 63  LVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRS 114
           LVA +CQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +   
Sbjct: 256 LVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYH 315

Query: 115 FMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRY 174
            MPI+ P+ P      N+++ST   +  +F  G+ I +++      W  +F+ + + + Y
Sbjct: 316 LMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAY 375

Query: 175 TQFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPN 231
             ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT+K   +
Sbjct: 376 KNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRH 435

Query: 232 VVFYWGLQ 239
             F+ GLQ
Sbjct: 436 CAFFMGLQ 443


>AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=787
          Length = 787

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 11/248 (4%)

Query: 3   NIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAV 62
           ++D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+
Sbjct: 196 DVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWAL 255

Query: 63  LVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRS 114
           LVA +CQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +   
Sbjct: 256 LVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYH 315

Query: 115 FMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRY 174
            MPI+ P+ P      N+++ST   +  +F  G+ I +++      W  +F+ + + + Y
Sbjct: 316 LMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAY 375

Query: 175 TQFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPN 231
             ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT+K   +
Sbjct: 376 KNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRH 435

Query: 232 VVFYWGLQ 239
             F+ GLQ
Sbjct: 436 CAFFMGLQ 443


>AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=786
          Length = 786

 Score =  147 bits (370), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 11/248 (4%)

Query: 3   NIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXXAV 62
           ++D+ + +SL+G R   +IL+LVPN E+F++ LRCLK WAK+R               A+
Sbjct: 196 DVDEQTVRSLNGCRVADQILKLVPNSEHFRTTLRCLKYWAKKRGVYSNVTGFLGGVNWAL 255

Query: 63  LVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIETRS 114
           LVA +CQ +P+A  + L++ FFR +  W WP PVML   +E  L   V     +  +   
Sbjct: 256 LVARLCQFYPNAIPSMLVSRFFRVYTQWRWPNPVMLCAIEEDDLSFPVWDPRKNHRDRYH 315

Query: 115 FMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSKRY 174
            MPI+ P+ P      N+++ST   +  +F  G+ I +++      W  +F+ + + + Y
Sbjct: 316 LMPIITPAYPCMNSSYNVSQSTLRVMTEQFQFGNTICQEIELNKQHWSSLFQQYMFFEAY 375

Query: 175 TQFVKIYLSTPDQRALGDWVGWVKSRFRGL-LGILEGVQG--FCDPNPTEYVDTNKTEPN 231
             ++++ +   D   L  W GWV+SRFR L L I     G   C P P EYVDT+K   +
Sbjct: 376 KNYLQVDVLAADAEDLLAWKGWVESRFRQLTLKIERDTNGMLMCHPQPNEYVDTSKQFRH 435

Query: 232 VVFYWGLQ 239
             F+ GLQ
Sbjct: 436 CAFFMGLQ 443


>AT1G17980.2 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6190318 REVERSE LENGTH=586
          Length = 586

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 147/290 (50%), Gaps = 18/290 (6%)

Query: 1   MRNIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXX 60
           ++N D+ + +SL+G R   +IL+LVPN++NF++ LRC++ WAKRR               
Sbjct: 55  LQNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINW 114

Query: 61  AVLVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIET 112
           A+LVA +CQ +P+A  N L++ FFR F  W WP  + L    EG L   V     +  + 
Sbjct: 115 ALLVARICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDR 174

Query: 113 RSFMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSK 172
              MPI+ P+ P      N+++ST   ++ EF RG+ I   +      WD +FE F + +
Sbjct: 175 LHIMPIITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFE 234

Query: 173 RYTQFVKIYLSTPDQRALGDWVGWVKSRFRGLLGILEG--VQGFCDPNPTEYVDTNKTEP 230
            Y  +++I +S  +   L  W GWV+SR R L   +E       C P+P ++ DT++   
Sbjct: 235 AYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKMLHCHPHPHDFQDTSRPL- 293

Query: 231 NVVFYWGLQHDK------YNLVDIDLVEGEFMKIINNGYEGSLGKMELSI 274
           +  ++ GLQ  +          DI     EF   + N Y   +  ME+S+
Sbjct: 294 HCSYFMGLQRKQGVPAAEGEQFDIRRTVEEFKHTV-NAYTLWIPGMEISV 342


>AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6191418 REVERSE LENGTH=713
          Length = 713

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 139/268 (51%), Gaps = 15/268 (5%)

Query: 1   MRNIDDTSWKSLSGVRANKRILQLVPNVENFQSVLRCLKLWAKRRXXXXXXXXXXXXXXX 60
           ++N D+ + +SL+G R   +IL+LVPN++NF++ LRC++ WAKRR               
Sbjct: 182 LQNADEQTVRSLNGCRVTDQILRLVPNIQNFRTTLRCMRFWAKRRGVYSNVSGFLGGINW 241

Query: 61  AVLVAYVCQRHPDATLNGLIANFFRTFAFWPWPTPVML---QEGMLPTVV-----DAIET 112
           A+LVA +CQ +P+A  N L++ FFR F  W WP  + L    EG L   V     +  + 
Sbjct: 242 ALLVARICQLYPNALPNILVSRFFRVFYQWNWPNAIFLCSPDEGSLGLQVWDPRINPKDR 301

Query: 113 RSFMPILLPSSPYEYCHSNITKSTFYRIRAEFLRGHNITRDLSKPDFIWDIVFELFPYSK 172
              MPI+ P+ P      N+++ST   ++ EF RG+ I   +      WD +FE F + +
Sbjct: 302 LHIMPIITPAYPCMNSSYNVSESTLRIMKGEFQRGNEICEAMESNKADWDTLFEPFAFFE 361

Query: 173 RYTQFVKIYLSTPDQRALGDWVGWVKSRFRGLLGILEG--VQGFCDPNPTEYVDTNKTEP 230
            Y  +++I +S  +   L  W GWV+SR R L   +E       C P+P ++ DT++   
Sbjct: 362 AYKNYLQIDISAANVDDLRKWKGWVESRLRQLTLKIERHFKMLHCHPHPHDFQDTSRPL- 420

Query: 231 NVVFYWGLQHDKYNLVDIDLVEGEFMKI 258
           +  ++ GLQ  +     +   EGE   I
Sbjct: 421 HCSYFMGLQRKQ----GVPAAEGEQFDI 444


>AT5G02670.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: poly(A) polymerase 3 (TAIR:AT3G06560.1); Has 14
           Blast hits to 8 proteins in 2 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr5:602971-604606 REVERSE LENGTH=372
          Length = 372

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 33/120 (27%)

Query: 180 IYLSTPDQRALGDWVGWVKSRFRGLLGILEGVQGFCDPNPTEYVDTNKTEPNVVFYWGLQ 239
           ++LS  +Q  L    GWVKSR          +  FCDPNP+E     ++   ++ + G  
Sbjct: 116 VHLSAANQEHLS---GWVKSR---------SLWHFCDPNPSE-----QSSHTLLSFTG-- 156

Query: 240 HDKYNLVDIDLVEGEFMKIINNGYEGSLGKMELSILLASQLPKNSQF--DERSVKGRKTC 297
               +   ++L  G F+        G +G+++LS+L ASQLPKN +   + RS K  KTC
Sbjct: 157 ----DYTSLNLNNGSFL--------GPVGRIQLSVLKASQLPKNCECASNNRSKKVTKTC 204