Miyakogusa Predicted Gene

Lj0g3v0326359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326359.1 tr|F2CVG6|F2CVG6_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,53.64,5e-19,POLY(A)
POLYMERASE-RELATED,NULL; POLY(A) POLYMERASE,NULL; no description,NULL;
Nucleotidyltransferas,CUFF.22190.1
         (111 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 | chr3:20444...   164   8e-42
AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymeras...    94   2e-20
AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase | chr4...    94   2e-20
AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase | chr4:...    94   2e-20
AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...    91   1e-19
AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...    91   1e-19
AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...    91   1e-19
AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 | chr2:11026...    91   1e-19
AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 | chr1:61877...    87   2e-18

>AT3G06560.1 | Symbols: PAPS3 | poly(A) polymerase 3 |
           chr3:2044443-2047034 FORWARD LENGTH=507
          Length = 507

 Score =  164 bits (416), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 74/111 (66%), Positives = 90/111 (81%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           M +EGL+PS E+E KR+  I +L++IV  W+K VAWQHRLP++QI  T+ATIL YGSYGL
Sbjct: 25  MVNEGLIPSLEDEVKRRGVINQLRKIVVRWVKNVAWQHRLPQNQIDATNATILPYGSYGL 84

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GV+ SESDIDALC+ PF+ASIAEDFF+ L  MLK R EVSE+ CVK AKVP
Sbjct: 85  GVYGSESDIDALCIGPFFASIAEDFFISLRDMLKSRREVSELHCVKDAKVP 135


>AT4G32850.8 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854443 FORWARD LENGTH=765
          Length = 765

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.7 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853906 FORWARD LENGTH=716
          Length = 716

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.3 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=735
          Length = 735

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.1 | Symbols: nPAP, PAP(IV) | nuclear poly(a) polymerase |
           chr4:15850134-15854375 FORWARD LENGTH=741
          Length = 741

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.6 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.2 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=738
          Length = 738

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.9 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.5 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854351 FORWARD LENGTH=745
          Length = 745

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.10 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15854266 FORWARD LENGTH=745
          Length = 745

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT4G32850.4 | Symbols: nPAP | nuclear poly(a) polymerase |
           chr4:15850134-15853810 FORWARD LENGTH=730
          Length = 730

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 65/111 (58%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S ++  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 47  LVDEGLYESKDDTMRREEVLGRIDQIVKHWVKQLTQQRGYTDQMVEDANAVIFTFGSYRL 106

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF++LH +L    EV+E+  V  A VP
Sbjct: 107 GVHGPGADIDTLCVGPSYVNREEDFFIILHDILAEMEEVTELHPVPDAHVP 157


>AT2G25850.3 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=786
          Length = 786

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S EE  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 49  LVDEGLYESKEETMRREEVVVRIDQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 108

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF+    +L    EV+E+  V  A VP
Sbjct: 109 GVHGPMADIDTLCVGPSYVNREEDFFIFFRDILAEMEEVTELQPVTDAHVP 159


>AT2G25850.2 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026123-11030440 REVERSE LENGTH=800
          Length = 800

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S EE  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 49  LVDEGLYESKEETMRREEVVVRIDQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 108

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF+    +L    EV+E+  V  A VP
Sbjct: 109 GVHGPMADIDTLCVGPSYVNREEDFFIFFRDILAEMEEVTELQPVTDAHVP 159


>AT2G25850.1 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=787
          Length = 787

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S EE  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 49  LVDEGLYESKEETMRREEVVVRIDQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 108

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF+    +L    EV+E+  V  A VP
Sbjct: 109 GVHGPMADIDTLCVGPSYVNREEDFFIFFRDILAEMEEVTELQPVTDAHVP 159


>AT2G25850.4 | Symbols: PAPS2 | poly(A) polymerase 2 |
           chr2:11026048-11030440 REVERSE LENGTH=797
          Length = 797

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/111 (39%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + DEGL  S EE  +R+  + ++ QIV  W+K++  Q       +   +A I T+GSY L
Sbjct: 49  LVDEGLYESKEETMRREEVVVRIDQIVKHWVKQLTRQRGYTDQMVEDANAVIFTFGSYRL 108

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P Y +  EDFF+    +L    EV+E+  V  A VP
Sbjct: 109 GVHGPMADIDTLCVGPSYVNREEDFFIFFRDILAEMEEVTELQPVTDAHVP 159


>AT1G17980.1 | Symbols: PAPS1 | poly(A) polymerase 1 |
           chr1:6187742-6191418 REVERSE LENGTH=713
          Length = 713

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 62/111 (55%)

Query: 1   MADEGLVPSPEEEEKRKNAIQKLKQIVSSWIKKVAWQHRLPKHQIAVTSATILTYGSYGL 60
           + D GL  S EE  +R+  +  L QIV +WIK ++    L    +   +A I T+GSY L
Sbjct: 37  LQDVGLYESKEEAVRREEVLGILDQIVKTWIKTISRAKGLNDQLLHEANAKIFTFGSYRL 96

Query: 61  GVHSSESDIDALCVAPFYASIAEDFFVVLHHMLKRRPEVSEILCVKSAKVP 111
           GVH   +DID LCV P +A+   DFF  L  ML   PEV+E+  V  A VP
Sbjct: 97  GVHGPGADIDTLCVGPRHATREGDFFGELQRMLSEMPEVTELHPVPDAHVP 147