Miyakogusa Predicted Gene

Lj0g3v0326269.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326269.3 Non Chatacterized Hit- tr|G1LG09|G1LG09_AILME
Uncharacterized protein OS=Ailuropoda melanoleuca
GN=N,26.92,0.00000000000003,Undecaprenyl diphosphate
synthase,Di-trans-poly-cis-decaprenylcistransferase-like; no
description,Di,CUFF.22187.3
         (256 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11755.1 | Symbols: LEW1 | Undecaprenyl pyrophosphate synthet...   241   5e-64

>AT1G11755.1 | Symbols: LEW1 | Undecaprenyl pyrophosphate synthetase
           family protein | chr1:3969987-3971488 REVERSE LENGTH=254
          Length = 254

 Score =  241 bits (614), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 124/241 (51%), Positives = 162/241 (67%), Gaps = 5/241 (2%)

Query: 18  IGNLGLRLIWYFLQVIVSTWYFVSAMVSLFESYFISYGVLKKYKSVHIGKLGSLAIVIES 77
           IG+LGL L+W F+ ++VS WY VS +    ESY I+ G+ KKY S+ + KL  LA+V++ 
Sbjct: 17  IGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYGSIDLEKLRCLAVVVDI 76

Query: 78  EDAHQTSKVVKLLQWLDSIGVKYVCLYDMNGVLKKSKEAIFQKLKNAKSIEGVNEAVTHH 137
           E A   + VV+LLQWL +IGVK V L+D  G+LKKSK+ I + +  +  +E + + V   
Sbjct: 77  EAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETVPGSMLLEEIEKDVA-- 134

Query: 138 VPD--HMTLEFISYVDGKEAVAKAANLTFEENLKRHNLGGELDGQILLEQQLNEALQIVG 195
            PD   + LEFIS  D KEAV KAAN+  +  LK  +   +       E  LN+AL++VG
Sbjct: 135 -PDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDFFTESHLNDALRVVG 193

Query: 196 GKGPEPDLLLVYGPVRSHLGFPAWRIRYTEIVHMGSLNSMRYGSLIKVIHNYTKVHQNYG 255
                PDLLLVYGP+RSHLGFPAWR+RYTEIVHMG+L  MRYGSL+K IH +T VHQNYG
Sbjct: 194 ENVHVPDLLLVYGPIRSHLGFPAWRLRYTEIVHMGTLKYMRYGSLLKAIHKFTGVHQNYG 253

Query: 256 T 256
           T
Sbjct: 254 T 254