Miyakogusa Predicted Gene

Lj0g3v0326259.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326259.1 Non Chatacterized Hit- tr|F1QU12|F1QU12_DANRE
Uncharacterized protein (Fragment) OS=Danio rerio
PE=4,30,2e-18,ZINC_FINGER_C2H2_1,Zinc finger, C2H2; zf-C2H2,Zinc
finger, C2H2; zf-C2H2_4,NULL; seg,NULL; zinc fing,CUFF.22180.1
         (359 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72050.2 | Symbols: TFIIIA | transcription factor IIIA | chr1...   384   e-107
AT1G72050.1 | Symbols: TFIIIA | transcription factor IIIA | chr1...   325   3e-89
AT4G06634.1 | Symbols:  | zinc finger (C2H2 type) family protein...    59   7e-09
AT4G06634.2 | Symbols:  | zinc finger (C2H2 type) family protein...    59   7e-09
AT4G06634.3 | Symbols:  | zinc finger (C2H2 type) family protein...    58   1e-08
AT5G04240.1 | Symbols: ELF6 | Zinc finger (C2H2 type) family pro...    57   2e-08
AT3G48430.1 | Symbols: REF6 | relative of early flowering 6 | ch...    53   3e-07

>AT1G72050.2 | Symbols: TFIIIA | transcription factor IIIA |
           chr1:27115082-27117228 FORWARD LENGTH=412
          Length = 412

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/387 (51%), Positives = 234/387 (60%), Gaps = 55/387 (14%)

Query: 15  DIRRYFCEYCGICRSKKTLITAHINXXXXXXXXXXXXXXX---XXXASKPKTCEQCGASF 71
           DIR Y C+YCGI RSK  LIT HI                      +S   TC++CGA F
Sbjct: 16  DIRNYLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEF 75

Query: 72  KKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQGKTFKCPIENCNSSFS 131
           KK A+L QHM+SHS ER + C VDDC ASYRRKDHL RHLL H+GK FKCP ENC S FS
Sbjct: 76  KKPAHLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFS 135

Query: 132 IQSNLKRHVDELH-------------DGKSTST--------------------------- 151
           +Q N+ RHV + H             DG   +T                           
Sbjct: 136 VQGNVGRHVKKYHSNDNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKENEGNGGSGK 195

Query: 152 ------------CVESQKQYVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCM 199
                       C   QKQ VC E+GCGK F+Y S+L+KH+DSHVKLDSV+  C EPGCM
Sbjct: 196 DNNGNGDSQPAECSTGQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCM 255

Query: 200 KHFTNAQCLRDHVKSCHQYVTCDICGTKQLKKNLKRHLRAHEAGSSSELFQCEYEGCDCT 259
           K+FTN +CL+ H++SCHQ++ C+ICG+K LKKN+KRHLR H+  SS    +CE EGC  T
Sbjct: 256 KYFTNEECLKSHIRSCHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSST 315

Query: 260 FSSKPNLHTHEKAVHFKEKPYVCGFPDCGMRFAYKHVRDNHEQTAKHVFTLGDFEEADEQ 319
           FS   NL  H KAVH   +P+VCGFP CGMRFAYKHVR+ HE +  HV+T GDF E DE 
Sbjct: 316 FSKASNLQKHMKAVHDDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDED 375

Query: 320 FRSRPRGGRKRVCPTVEMLIRKRVTPP 346
           F SRPRGG KR   T EML+RKRV PP
Sbjct: 376 FTSRPRGGLKRKQVTAEMLVRKRVMPP 402


>AT1G72050.1 | Symbols: TFIIIA | transcription factor IIIA |
           chr1:27115808-27117228 FORWARD LENGTH=324
          Length = 324

 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 164/312 (52%), Positives = 194/312 (62%), Gaps = 52/312 (16%)

Query: 87  ERPYVCTVDDCKASYRRKDHLTRHLLQHQGKTFKCPIENCNSSFSIQSNLKRHVDELH-- 144
           ER + C VDDC ASYRRKDHL RHLL H+GK FKCP ENC S FS+Q N+ RHV + H  
Sbjct: 3   ERSFTCYVDDCAASYRRKDHLNRHLLTHKGKLFKCPKENCKSEFSVQGNVGRHVKKYHSN 62

Query: 145 -----------DGKSTSTC---------------------------------------VE 154
                      DG   +TC                                         
Sbjct: 63  DNRDKDNTGLGDGDKDNTCKGDDDKEKSGSGGCEKENEGNGGSGKDNNGNGDSQPAECST 122

Query: 155 SQKQYVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCMKHFTNAQCLRDHVKS 214
            QKQ VC E+GCGK F+Y S+L+KH+DSHVKLDSV+  C EPGCMK+FTN +CL+ H++S
Sbjct: 123 GQKQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRS 182

Query: 215 CHQYVTCDICGTKQLKKNLKRHLRAHEAGSSSELFQCEYEGCDCTFSSKPNLHTHEKAVH 274
           CHQ++ C+ICG+K LKKN+KRHLR H+  SS    +CE EGC  TFS   NL  H KAVH
Sbjct: 183 CHQHINCEICGSKHLKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVH 242

Query: 275 FKEKPYVCGFPDCGMRFAYKHVRDNHEQTAKHVFTLGDFEEADEQFRSRPRGGRKRVCPT 334
              +P+VCGFP CGMRFAYKHVR+ HE +  HV+T GDF E DE F SRPRGG KR   T
Sbjct: 243 DDIRPFVCGFPGCGMRFAYKHVRNKHENSGYHVYTCGDFVETDEDFTSRPRGGLKRKQVT 302

Query: 335 VEMLIRKRVTPP 346
            EML+RKRV PP
Sbjct: 303 AEMLVRKRVMPP 314


>AT4G06634.1 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr4:3764499-3766439 REVERSE LENGTH=387
          Length = 387

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 20/191 (10%)

Query: 90  YVCTVDDCKASYRRKDHLTRHLLQHQGKTFKCPIENCNSSFSIQSNLKRHVDELHDGKST 149
           ++C+ D C  ++     L +H   H  + + C  E C   F   S LKRH   +H G   
Sbjct: 79  FLCSYDGCGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHY-LIHTG--- 134

Query: 150 STCVESQKQYVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCMKHFTNAQCLR 209
                 ++ Y+C   GCGK F     LR H  +H + +    +C   GC+K + +   L+
Sbjct: 135 ------ERNYICTYEGCGKAFSLDFNLRSHMKTHSQENY--HICPYSGCVKRYAHEYKLK 186

Query: 210 DHVKSCHQYVTCDICGTKQLKKNLKRHLRAHE------AGSSSELFQCEYEGCDCTFSSK 263
           +HV + H+        T +     ++ LR  +        SS   + C YEGC+  +  +
Sbjct: 187 NHVAAYHE--KNGGGETPKYTPPAEKVLRTVKTPATVCGPSSDRPYACPYEGCEKAYIHE 244

Query: 264 PNLHTHEKAVH 274
             L  H K  H
Sbjct: 245 YKLKLHLKREH 255



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 32/142 (22%)

Query: 159 YVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCMKHFTNAQCLRDHVKSCHQY 218
           ++C   GCGK F   S LRKH  SH+  +    VC + GC K F ++             
Sbjct: 79  FLCSYDGCGKTFFDVSALRKH--SHIHGER-QYVCDQEGCGKKFLDSS------------ 123

Query: 219 VTCDICGTKQLKKNLKRHLRAHEAGSSSELFQCEYEGCDCTFSSKPNLHTHEKAVHFKEK 278
                         LKRH   H   +    + C YEGC   FS   NL +H K  H +E 
Sbjct: 124 -------------KLKRHYLIH---TGERNYICTYEGCGKAFSLDFNLRSHMK-THSQEN 166

Query: 279 PYVCGFPDCGMRFAYKHVRDNH 300
            ++C +  C  R+A+++   NH
Sbjct: 167 YHICPYSGCVKRYAHEYKLKNH 188



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 27/157 (17%)

Query: 65  EQCGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQGKTFK-CPI 123
           E CG  F   + L +H   H+ ER Y+CT + C  ++    +L  H+  H  + +  CP 
Sbjct: 113 EGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHICPY 172

Query: 124 ENCNSSFSIQSNLKRHVDELHDGK----------------------STSTCVESQKQYVC 161
             C   ++ +  LK HV   H+                        +T     S + Y C
Sbjct: 173 SGCVKRYAHEYKLKNHVAAYHEKNGGGETPKYTPPAEKVLRTVKTPATVCGPSSDRPYAC 232

Query: 162 PEVGCGKVFRYASKLRKH----EDSHVKLDSVDVVCL 194
           P  GC K + +  KL+ H       H++ ++ D   L
Sbjct: 233 PYEGCEKAYIHEYKLKLHLKREHPGHLQEENADTPTL 269


>AT4G06634.2 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr4:3764499-3766177 REVERSE LENGTH=349
          Length = 349

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 83/196 (42%), Gaps = 20/196 (10%)

Query: 85  SAERPYVCTVDDCKASYRRKDHLTRHLLQHQGKTFKCPIENCNSSFSIQSNLKRHVDELH 144
           + E  ++C+ D C  ++     L +H   H  + + C  E C   F   S LKRH   +H
Sbjct: 36  TTEILFLCSYDGCGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHY-LIH 94

Query: 145 DGKSTSTCVESQKQYVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCMKHFTN 204
            G         ++ Y+C   GCGK F     LR H  +H + +    +C   GC+K + +
Sbjct: 95  TG---------ERNYICTYEGCGKAFSLDFNLRSHMKTHSQENY--HICPYSGCVKRYAH 143

Query: 205 AQCLRDHVKSCHQYVTCDICGTKQLKKNLKRHLRAHE------AGSSSELFQCEYEGCDC 258
              L++HV + H+        T +     ++ LR  +        SS   + C YEGC+ 
Sbjct: 144 EYKLKNHVAAYHE--KNGGGETPKYTPPAEKVLRTVKTPATVCGPSSDRPYACPYEGCEK 201

Query: 259 TFSSKPNLHTHEKAVH 274
            +  +  L  H K  H
Sbjct: 202 AYIHEYKLKLHLKREH 217



 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 14/117 (11%)

Query: 65  EQCGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQG-KTFKCPI 123
           + CG +F   + L +H   H  ER YVC  + C   +     L RH L H G + + C  
Sbjct: 46  DGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERNYICTY 104

Query: 124 ENCNSSFSIQSNLKRHVDELHDGKSTSTCVESQKQY-VCPEVGCGKVFRYASKLRKH 179
           E C  +FS+  NL+ H+              SQ+ Y +CP  GC K + +  KL+ H
Sbjct: 105 EGCGKAFSLDFNLRSHMK-----------THSQENYHICPYSGCVKRYAHEYKLKNH 150



 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 32/142 (22%)

Query: 159 YVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDVVCLEPGCMKHFTNAQCLRDHVKSCHQY 218
           ++C   GCGK F   S LRKH  SH+  +    VC + GC K F ++             
Sbjct: 41  FLCSYDGCGKTFFDVSALRKH--SHIHGER-QYVCDQEGCGKKFLDSS------------ 85

Query: 219 VTCDICGTKQLKKNLKRHLRAHEAGSSSELFQCEYEGCDCTFSSKPNLHTHEKAVHFKEK 278
                         LKRH   H   +    + C YEGC   FS   NL +H K  H +E 
Sbjct: 86  -------------KLKRHYLIH---TGERNYICTYEGCGKAFSLDFNLRSHMK-THSQEN 128

Query: 279 PYVCGFPDCGMRFAYKHVRDNH 300
            ++C +  C  R+A+++   NH
Sbjct: 129 YHICPYSGCVKRYAHEYKLKNH 150



 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 27/157 (17%)

Query: 65  EQCGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQGKTFK-CPI 123
           E CG  F   + L +H   H+ ER Y+CT + C  ++    +L  H+  H  + +  CP 
Sbjct: 75  EGCGKKFLDSSKLKRHYLIHTGERNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHICPY 134

Query: 124 ENCNSSFSIQSNLKRHVDELHDGK----------------------STSTCVESQKQYVC 161
             C   ++ +  LK HV   H+                        +T     S + Y C
Sbjct: 135 SGCVKRYAHEYKLKNHVAAYHEKNGGGETPKYTPPAEKVLRTVKTPATVCGPSSDRPYAC 194

Query: 162 PEVGCGKVFRYASKLRKH----EDSHVKLDSVDVVCL 194
           P  GC K + +  KL+ H       H++ ++ D   L
Sbjct: 195 PYEGCEKAYIHEYKLKLHLKREHPGHLQEENADTPTL 231


>AT4G06634.3 | Symbols:  | zinc finger (C2H2 type) family protein |
           chr4:3764499-3766439 REVERSE LENGTH=380
          Length = 380

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 84/193 (43%), Gaps = 20/193 (10%)

Query: 90  YVCTVDDCKASYRRKDHLTRHLLQHQGKTFKCPIENCNSSFSIQSNLKRHVDELHDGKST 149
           ++C+ D C  ++     L +H   H  + + C  E C   F   S LKRH   +H G   
Sbjct: 68  FLCSYDGCGKTFFDVSALRKHSHIHGERQYVCDQEGCGKKFLDSSKLKRHY-LIHTG--- 123

Query: 150 STCVESQKQYVCPEVGCGKVFRYASKLRKHEDSHVKLDSVDV--VCLEPGCMKHFTNAQC 207
                 ++ Y+C   GCGK++  A  L  +  SH+K  S +   +C   GC+K + +   
Sbjct: 124 ------ERNYICTYEGCGKLWMQAFSLDFNLRSHMKTHSQENYHICPYSGCVKRYAHEYK 177

Query: 208 LRDHVKSCHQYVTCDICGTKQLKKNLKRHLRAHE------AGSSSELFQCEYEGCDCTFS 261
           L++HV + H+        T +     ++ LR  +        SS   + C YEGC+  + 
Sbjct: 178 LKNHVAAYHE--KNGGGETPKYTPPAEKVLRTVKTPATVCGPSSDRPYACPYEGCEKAYI 235

Query: 262 SKPNLHTHEKAVH 274
            +  L  H K  H
Sbjct: 236 HEYKLKLHLKREH 248


>AT5G04240.1 | Symbols: ELF6 | Zinc finger (C2H2 type) family protein
            / transcription factor jumonji (jmj) family protein |
            chr5:1169544-1174638 FORWARD LENGTH=1340
          Length = 1340

 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 63   TCEQCGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQG-KTFKC 121
            T E CG  F+ H YL+ H R H  ERP+ C+   C  +++ +   T HL  H G + + C
Sbjct: 1254 THEGCGKKFRAHKYLVLHQRVHKDERPFECSWKGCSMTFKWQWARTEHLRLHTGERPYIC 1313

Query: 122  PIENCNSSFSIQSNLKRH 139
             ++ C  SF   S+  RH
Sbjct: 1314 KVDGCGLSFRFVSDYSRH 1331


>AT3G48430.1 | Symbols: REF6 | relative of early flowering 6 |
            chr3:17935609-17940456 FORWARD LENGTH=1360
          Length = 1360

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 67   CGASFKKHAYLLQHMRSHSAERPYVCTVDDCKASYRRKDHLTRHLLQHQG-KTFKCPIEN 125
            CG +F  H YL+QH R HS +RP  C    CK +++     T H+  H G + + C   +
Sbjct: 1273 CGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRTEHIRVHTGARPYVCAEPD 1332

Query: 126  CNSSFSIQSNLKRH 139
            C  +F   S+  RH
Sbjct: 1333 CGQTFRFVSDFSRH 1346