Miyakogusa Predicted Gene
- Lj0g3v0326059.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0326059.1 Non Chatacterized Hit- tr|K3YYY6|K3YYY6_SETIT
Uncharacterized protein OS=Setaria italica GN=Si019492,50.62,5e-19,ABC
TRANSPORTER,NULL; ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A
(ABCA),ABC transporter A, ABCA,CUFF.22163.1
(87 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 | chr5:2... 145 6e-36
AT3G47780.1 | Symbols: ATATH6, ATH6 | ABC2 homolog 6 | chr3:1762... 139 5e-34
AT3G47740.1 | Symbols: ATATH2, ATH2, ABCA3 | ABC2 homolog 2 | ch... 136 3e-33
AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 | ch... 134 1e-32
AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette subf... 134 2e-32
AT5G61740.1 | Symbols: ATATH14, ATH14 | ABC2 homolog 14 | chr5:2... 124 1e-29
AT3G47770.1 | Symbols: ATATH5, ATH5, ABCA6 | ABC2 homolog 5 | ch... 124 2e-29
AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 | chr3:1762... 112 4e-26
>AT5G61700.1 | Symbols: ATATH16, ATH16 | ABC2 homolog 16 |
chr5:24793864-24797944 FORWARD LENGTH=888
Length = 888
Score = 145 bits (365), Expect = 6e-36, Method: Composition-based stats.
Identities = 70/87 (80%), Positives = 76/87 (87%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
MTTSS HE EVE LV ++PNA KIYHL+GTQKFELPK+EVRIA+VFRAVE AK NFTV
Sbjct: 802 MTTSSKHEEEVERLVESVSPNAKKIYHLAGTQKFELPKQEVRIAEVFRAVEKAKANFTVF 861
Query: 61 AWGLADTTLEDVFIKVAREAQAFDTLS 87
AWGLADTTLEDVFIKVAR AQAF +LS
Sbjct: 862 AWGLADTTLEDVFIKVARTAQAFISLS 888
>AT3G47780.1 | Symbols: ATATH6, ATH6 | ABC2 homolog 6 |
chr3:17624500-17628972 FORWARD LENGTH=935
Length = 935
Score = 139 bits (349), Expect = 5e-34, Method: Composition-based stats.
Identities = 63/87 (72%), Positives = 74/87 (85%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
MTTSS+HE+ VE L+ ++PNA KIYH++GTQKFELPKEEVRI++VF+AVE AK NFTV
Sbjct: 849 MTTSSEHEQNVEKLIKDVSPNAKKIYHIAGTQKFELPKEEVRISEVFQAVEKAKSNFTVF 908
Query: 61 AWGLADTTLEDVFIKVAREAQAFDTLS 87
AWGLADTTLEDVFIKV R QAF+ S
Sbjct: 909 AWGLADTTLEDVFIKVVRNGQAFNVFS 935
>AT3G47740.1 | Symbols: ATATH2, ATH2, ABCA3 | ABC2 homolog 2 |
chr3:17600651-17604965 FORWARD LENGTH=932
Length = 932
Score = 136 bits (342), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/87 (70%), Positives = 75/87 (86%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
MTTSS+HE++VE LV +++PN KIYH++GTQKFE+PK+EVRI++VF+ VE AK NF V
Sbjct: 846 MTTSSEHEKDVEMLVQEVSPNVKKIYHIAGTQKFEIPKDEVRISEVFQVVEKAKSNFKVF 905
Query: 61 AWGLADTTLEDVFIKVAREAQAFDTLS 87
AWGLADTTLEDVFIKVAR AQAF+ S
Sbjct: 906 AWGLADTTLEDVFIKVARTAQAFNVFS 932
>AT3G47760.1 | Symbols: ATATH4, ATH4, ABCA5 | ABC2 homolog 4 |
chr3:17611787-17616639 FORWARD LENGTH=872
Length = 872
Score = 134 bits (337), Expect = 1e-32, Method: Composition-based stats.
Identities = 62/87 (71%), Positives = 74/87 (85%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
MTT S+HE++VE LV ++PNA KIYH++GTQKFE+PKEEVRI++VF+AVE AK NF V
Sbjct: 786 MTTPSEHEKDVEMLVQDVSPNAKKIYHIAGTQKFEIPKEEVRISEVFQAVEKAKDNFRVF 845
Query: 61 AWGLADTTLEDVFIKVAREAQAFDTLS 87
AWGLADTTLEDVFIKVAR AQA + S
Sbjct: 846 AWGLADTTLEDVFIKVARTAQASNVFS 872
>AT3G47750.1 | Symbols: ATATH3, ABCA4 | ATP binding cassette
subfamily A4 | chr3:17606427-17610889 FORWARD LENGTH=947
Length = 947
Score = 134 bits (336), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/87 (70%), Positives = 75/87 (86%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
MTTSS+HE++VE L+ ++PNA KIYH++GTQKFE+PK+EVRIA++F+AVE AK NF V
Sbjct: 861 MTTSSEHEKDVEMLIQDVSPNAKKIYHIAGTQKFEIPKDEVRIAELFQAVEKAKGNFRVF 920
Query: 61 AWGLADTTLEDVFIKVAREAQAFDTLS 87
AWGLADTTLEDVFIKVAR AQA + S
Sbjct: 921 AWGLADTTLEDVFIKVARTAQASNVFS 947
>AT5G61740.1 | Symbols: ATATH14, ATH14 | ABC2 homolog 14 |
chr5:24808484-24812597 FORWARD LENGTH=848
Length = 848
Score = 124 bits (311), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/87 (65%), Positives = 70/87 (80%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
MTTS +HE +VE +V ++PN+ ++YHL+GTQKFE+PK+EV IADVF VE K FTV
Sbjct: 762 MTTSVEHEEKVERMVKHISPNSKRVYHLAGTQKFEIPKQEVMIADVFFMVEKVKSKFTVF 821
Query: 61 AWGLADTTLEDVFIKVAREAQAFDTLS 87
AWGLADTTLEDVF KVA AQAF++LS
Sbjct: 822 AWGLADTTLEDVFFKVATTAQAFNSLS 848
>AT3G47770.1 | Symbols: ATATH5, ATH5, ABCA6 | ABC2 homolog 5 |
chr3:17618055-17622678 FORWARD LENGTH=900
Length = 900
Score = 124 bits (310), Expect = 2e-29, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 70/78 (89%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
+TTS +HE++VE+LV +++ NA KIYH++GTQKFE PKEEVRI++VF+AVE AK+NFTV
Sbjct: 820 ITTSPEHEKDVETLVQEVSSNARKIYHIAGTQKFEFPKEEVRISEVFQAVENAKRNFTVF 879
Query: 61 AWGLADTTLEDVFIKVAR 78
AWG ADTTLEDVFIKVA+
Sbjct: 880 AWGFADTTLEDVFIKVAK 897
>AT3G47790.1 | Symbols: ATATH7, ATH7 | ABC2 homolog 7 |
chr3:17629584-17633711 FORWARD LENGTH=901
Length = 901
Score = 112 bits (281), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/80 (65%), Positives = 65/80 (81%)
Query: 1 MTTSSDHEREVESLVMKLTPNANKIYHLSGTQKFELPKEEVRIADVFRAVEAAKKNFTVS 60
+TTS +HE+EVE LV ++ NA KIY +GTQKFELPK+EV+I +VF+A+E AK F V
Sbjct: 822 VTTSEEHEKEVEQLVHNISTNAKKIYRTAGTQKFELPKQEVKIGEVFKALEKAKTMFPVV 881
Query: 61 AWGLADTTLEDVFIKVAREA 80
AWGLADTTLEDVFIKVA+ +
Sbjct: 882 AWGLADTTLEDVFIKVAQTS 901