Miyakogusa Predicted Gene

Lj0g3v0325919.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0325919.1 tr|C8RZD4|C8RZD4_9RHOB Translation initiation
factor IF-3 OS=Rhodobacter sp. SW2 GN=infC PE=3
SV=1,33.97,5e-18,IF3_N,Translation initiation factor 3, N-terminal;
IF3_C,Translation initiation factor 3, C-terminal,CUFF.22148.1
         (384 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G34360.1 | Symbols:  | translation initiation factor 3 (IF-3)...   167   1e-41
AT2G24060.1 | Symbols:  | Translation initiation factor 3 protei...    52   6e-07
AT4G30690.1 | Symbols:  | Translation initiation factor 3 protei...    52   6e-07

>AT1G34360.1 | Symbols:  | translation initiation factor 3 (IF-3)
           family protein | chr1:12542986-12546025 FORWARD
           LENGTH=520
          Length = 520

 Score =  167 bits (423), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 108/265 (40%), Positives = 149/265 (56%), Gaps = 13/265 (4%)

Query: 1   MAFLHQIGKRKLKTVCIQL-RRCYIRLPHDSS---LNSTPKPYPSEIPRPCSVFHGRPSS 56
           MA    I +  LK    QL R  Y ++   SS   +  T K    +IP   S    RPS+
Sbjct: 1   MAIWRIINRSYLKYASNQLTRNYYTQVCLASSTHVVKQTTKLSSFDIPN--SDICTRPSN 58

Query: 57  VYNSVRFFAAPIQFQPKPKKEEDNGPRLNDEIRAQFIRLVSDDGHTVVSRFQALERARNL 116
           ++ ++RF A   Q + K  + + +GPRLN++I   ++RLVS++GH VVS  +AL RA+ L
Sbjct: 59  IFQNLRFLATSAQTRKKEAEVDSDGPRLNEKITGDYVRLVSEEGHCVVSLREALRRAKEL 118

Query: 117 KLDLVEVDKNAKPPVCKIMDFHKEAYKKQEKDKERAKSKSEVTLRKGECKEVRISEKTES 176
           + DLVEV ++AKPPVCKI+ +  E YKK +  KERAK+K    +R  + KE+R + K E+
Sbjct: 119 QCDLVEVQRDAKPPVCKIVKYSLELYKKAKVGKERAKAKRAEAIRP-DIKEIRFTPKIEA 177

Query: 177 KDIKMKADMVKKLMEKGYRVKCKATSSNENADLAGSSLS-----RLLAQIEDVCVVESGP 231
           KD+K K+D   KLME GYRVKC A    +               R    I D  +VES P
Sbjct: 178 KDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEKLLELLFRFTCFIGDA-LVESWP 236

Query: 232 HIARKEVYMVVRHVKYGPSKKGAKK 256
              RK   ++VRH K+GP KKG  K
Sbjct: 237 EADRKGAVVIVRHAKFGPPKKGGVK 261


>AT2G24060.1 | Symbols:  | Translation initiation factor 3 protein |
           chr2:10229453-10231390 FORWARD LENGTH=312
          Length = 312

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 20/194 (10%)

Query: 73  KPKKEEDNGPRLNDEIRAQFIRLVSDDGHT----VVSRFQALERARNLKLDLVEVDKNAK 128
           +PK+ E +       IR+  +RL+  DG      +VS+ +A+  A + +LDLV +  +A 
Sbjct: 80  RPKEAEIDEALDISSIRSATVRLI--DGQQNMLGLVSKDEAVRMADDAELDLVILSPDAD 137

Query: 129 PPVCKIMDFHKEAYKKQEKDKERAKSKSEVTLRKGECKEVRISEKTESKDIKMKADMVKK 188
           PPV K+MD+ K  Y++Q++ K++ K  + + L     KE+++    +  D  ++    +K
Sbjct: 138 PPVVKMMDYSKYRYEQQKRKKDQQKKTTRMDL-----KELKMGYNIDQHDYSVRLRAAQK 192

Query: 189 LMEKGYRVKCKATS---SNENADLAGSSLSRLLAQIEDVCVVESGPHIARKEVYMVVRHV 245
            ++ G +VK   +     NE  ++A   L R   +I ++   ES     R    ++V   
Sbjct: 193 FLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNFRDRNMFIILV--- 249

Query: 246 KYGPSKKGAKKPQD 259
              P+K+  +KPQ+
Sbjct: 250 ---PNKEMIRKPQE 260


>AT4G30690.1 | Symbols:  | Translation initiation factor 3 protein |
           chr4:14960742-14962328 FORWARD LENGTH=281
          Length = 281

 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 16/192 (8%)

Query: 73  KPKKEEDNGPRLNDEIRAQFIRLVSDDGHTV--VSRFQALERARNLKLDLVEVDKNAKPP 130
           + K+ ED+       IR+  +RL+ D  + +  VS+ +A+ RA + +LDLV +  +A PP
Sbjct: 76  RQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAELDLVILSPDADPP 135

Query: 131 VCKIMDFHKEAYKKQEKDKERAKSKSEVTLRKGECKEVRISEKTESKDIKMKADMVKKLM 190
           V ++MD+ K  Y++Q++ KE+ K  + + L     KE+++    +  D  ++    +K +
Sbjct: 136 VVRMMDYSKYRYEQQKRKKEQQKKTTRMDL-----KELKMGYNIDQHDYSVRMRAARKFL 190

Query: 191 EKGYRVKCKATS---SNENADLAGSSLSRLLAQIEDVCVVESGPHIARKEVYMVVRHVKY 247
           + G +VK         NE  ++A   L R   +I ++   ES     R    ++V     
Sbjct: 191 QDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNLFIVLV----- 245

Query: 248 GPSKKGAKKPQD 259
            P+K+  +K Q+
Sbjct: 246 -PNKEVIRKVQE 256