Miyakogusa Predicted Gene

Lj0g3v0325259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0325259.1 CUFF.22488.1
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26140.1 | Symbols: ftsh4 | FTSH protease 4 | chr2:11131939-1...    71   5e-13
AT1G07510.1 | Symbols: ftsh10 | FTSH protease 10 | chr1:2305689-...    70   2e-12
AT5G53170.1 | Symbols: FTSH11 | FTSH protease 11 | chr5:21563023...    68   6e-12
AT2G29080.1 | Symbols: ftsh3 | FTSH protease 3 | chr2:12489911-1...    64   7e-11
AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 | chr1:18614398-1...    62   3e-10
AT5G15250.2 | Symbols: FTSH6 | FTSH protease 6 | chr5:4950411-49...    62   4e-10
AT5G15250.1 | Symbols: FTSH6, ATFTSH6 | FTSH protease 6 | chr5:4...    62   4e-10
AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular protease...    60   9e-10
AT2G30950.1 | Symbols: VAR2, FTSH2 | FtsH extracellular protease...    57   1e-08
AT1G06430.1 | Symbols: FTSH8 | FTSH protease 8 | chr1:1960214-19...    54   8e-08

>AT2G26140.1 | Symbols: ftsh4 | FTSH protease 4 |
           chr2:11131939-11135126 REVERSE LENGTH=717
          Length = 717

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 41  TCVHESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTSSHL-MTRKKLIDEMVISM 99
           T  HE GHA+      G   +  AT+VP    LG    L       ++RK+++  + + M
Sbjct: 483 TAFHEGGHALVAIHTEGALPVHKATIVPRGMALGMVSQLPDKDETSISRKQMLARLDVCM 542

Query: 100 AASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYFDFENLSNLKLSH 159
               AE  I G   V +GAS D  +A  +AR +V  +GMS   G    ++++ +   +S 
Sbjct: 543 GGRVAEELIFGESEVTSGASSDLEQATKLARAMVTKFGMSKEVGLVAHNYDD-NGKSMST 601

Query: 160 RTRYEIDEEVNFLLDEAWNMAKELI 184
            TR  I+ EV  LL++A+N AK ++
Sbjct: 602 ETRLLIESEVKQLLEKAYNNAKTIL 626


>AT1G07510.1 | Symbols: ftsh10 | FTSH protease 10 |
           chr1:2305689-2309380 FORWARD LENGTH=813
          Length = 813

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 73/143 (51%), Gaps = 4/143 (2%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVP-GPDYLGCTRYLSTSSHLMTRKKLIDEMVISMAAS 102
           HESGHAVA   L   E L   T+VP G   LG  +Y+   + LMT+++L D   +++   
Sbjct: 592 HESGHAVAGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGR 651

Query: 103 SAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYF-DFENLSNLKLSHRT 161
           +AE  ++G   + TGA  D  +   +    VA+YG S   G   F   E+  +   S+RT
Sbjct: 652 AAEQVLIGR--ISTGAQNDLEKVTKMTYAQVAVYGFSDKIGLLSFPQREDEFSKPYSNRT 709

Query: 162 RYEIDEEVNFLLDEAWNMAKELI 184
              IDEEV   + +A+    ELI
Sbjct: 710 GAMIDEEVREWVGKAYKRTVELI 732


>AT5G53170.1 | Symbols: FTSH11 | FTSH protease 11 |
           chr5:21563023-21567922 REVERSE LENGTH=806
          Length = 806

 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 7/145 (4%)

Query: 41  TCVHESGHAVAVAVLSGVEKLCNATVVPGPDYLG-CTRYLSTSSHLMTRKKLIDEMVISM 99
           T  HESGHA+      G   +  AT++P    LG  T+  S     +++++L+  + + M
Sbjct: 617 TAYHESGHAIVALNTKGAHPIHKATIMPRGSALGMVTQLPSNDETSVSKRQLLARLDVCM 676

Query: 100 AASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAYFDFENLSNLKLSH 159
               AE  I G + + TGAS D  +A  +A+ +V+  GMS   GP +      S+++   
Sbjct: 677 GGRVAEELIFGLDHITTGASSDLSQATELAQYMVSSCGMSEAIGPVHIKERPSSDMQ--- 733

Query: 160 RTRYEIDEEVNFLLDEAWNMAKELI 184
                ID EV  LL EA+   K L+
Sbjct: 734 ---SRIDAEVVKLLREAYERVKSLL 755


>AT2G29080.1 | Symbols: ftsh3 | FTSH protease 3 |
           chr2:12489911-12492999 REVERSE LENGTH=809
          Length = 809

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 8/146 (5%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVP-GPDYLGCTRYLSTSSHLMTRKKLIDEMVISMAAS 102
           HESGHAV    L   E L   T+VP G   LG  +Y+   + LMT+++L D   +++   
Sbjct: 586 HESGHAVVGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGR 645

Query: 103 SAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFG----PAYFDFENLSNLKLS 158
           +AE  ++G   + TGA  D  +   +    VA+YG S   G    P   D  + S    S
Sbjct: 646 AAEQVLIGK--ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPRDDGYDFSK-PYS 702

Query: 159 HRTRYEIDEEVNFLLDEAWNMAKELI 184
           ++T   IDEEV   + +A+    EL+
Sbjct: 703 NKTGAIIDEEVRDWVAKAYERTVELV 728


>AT1G50250.1 | Symbols: FTSH1 | FTSH protease 1 |
           chr1:18614398-18616930 REVERSE LENGTH=716
          Length = 716

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 13/154 (8%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTS----SHLMTRKKLIDEMVISM 99
           HE+GHA+  A++   + +   +++P     G T +  +     S L +R  L ++M +++
Sbjct: 524 HEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVAL 583

Query: 100 AASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMS--------AGFGPAYFDFEN 151
               AE  I G E V TGAS DF +   +AR ++  +G S         G G   F  + 
Sbjct: 584 GGRVAEEVIFGDENVTTGASNDFMQVSRVARQMIERFGFSKKIGQVAVGGPGGNPFMGQQ 643

Query: 152 LSNLK-LSHRTRYEIDEEVNFLLDEAWNMAKELI 184
           +S+ K  S  T   +D EV  L+++A+  A E+I
Sbjct: 644 MSSQKDYSMATADIVDAEVRELVEKAYKRATEII 677


>AT5G15250.2 | Symbols: FTSH6 | FTSH protease 6 |
           chr5:4950411-4952771 REVERSE LENGTH=709
          Length = 709

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYL-STSSHLMTRKKLIDEMVISMAAS 102
           HE GHA+   +  G + +   T+VP     G T +L      L+++++L   +V  +   
Sbjct: 506 HEVGHAICATLTEGHDPVQKVTLVPRGQARGLTWFLPGEDPTLVSKQQLFARIVGGLGGR 565

Query: 103 SAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGP-AYFD---------FENL 152
           +AE  I G   + TGA+GD  +   IAR +V M+GMS   GP A  D            L
Sbjct: 566 AAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMSE-IGPWALTDPAVKQNDVVLRML 624

Query: 153 SNLKLSHRTRYEIDEEVNFLLDEAWNMAKE 182
           +   +S +   +ID  V  ++ +A+ +AK+
Sbjct: 625 ARNSMSEKLAEDIDSCVKKIIGDAYEVAKK 654


>AT5G15250.1 | Symbols: FTSH6, ATFTSH6 | FTSH protease 6 |
           chr5:4950411-4952777 REVERSE LENGTH=688
          Length = 688

 Score = 61.6 bits (148), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 12/150 (8%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYL-STSSHLMTRKKLIDEMVISMAAS 102
           HE GHA+   +  G + +   T+VP     G T +L      L+++++L   +V  +   
Sbjct: 485 HEVGHAICATLTEGHDPVQKVTLVPRGQARGLTWFLPGEDPTLVSKQQLFARIVGGLGGR 544

Query: 103 SAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGP-AYFD---------FENL 152
           +AE  I G   + TGA+GD  +   IAR +V M+GMS   GP A  D            L
Sbjct: 545 AAEDVIFGEPEITTGAAGDLQQVTEIARQMVTMFGMSE-IGPWALTDPAVKQNDVVLRML 603

Query: 153 SNLKLSHRTRYEIDEEVNFLLDEAWNMAKE 182
           +   +S +   +ID  V  ++ +A+ +AK+
Sbjct: 604 ARNSMSEKLAEDIDSCVKKIIGDAYEVAKK 633


>AT5G42270.1 | Symbols: VAR1, FTSH5 | FtsH extracellular protease
           family | chr5:16902659-16905102 FORWARD LENGTH=704
          Length = 704

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 13/154 (8%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYLSTS----SHLMTRKKLIDEMVISM 99
           HE+GHA+  A++   + +   +++P     G T +  +     S L +R  L ++M +++
Sbjct: 512 HEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVAL 571

Query: 100 AASSAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGPAY--------FDFEN 151
               AE  I G E V TGAS DF +   +AR +V  +G S   G           F  ++
Sbjct: 572 GGRVAEEVIFGDENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAVGGAGGNPFLGQS 631

Query: 152 LSNLK-LSHRTRYEIDEEVNFLLDEAWNMAKELI 184
           +S+ K  S  T   +D EV  L+++A+  AKE+I
Sbjct: 632 MSSQKDYSMATADVVDAEVRELVEKAYVRAKEII 665


>AT2G30950.1 | Symbols: VAR2, FTSH2 | FtsH extracellular protease
           family | chr2:13174692-13177064 FORWARD LENGTH=695
          Length = 695

 Score = 56.6 bits (135), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYL-STSSHLMTRKKLIDEMVISMAAS 102
           HE GHAV   +  G + +   T++P     G T ++ S    L+++++L   +V  +   
Sbjct: 488 HEVGHAVCGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGR 547

Query: 103 SAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGP-AYFDFENLSNL------ 155
           +AE  I G   V TGA GD  +   +AR +V  +GMS   GP +  D    S++      
Sbjct: 548 AAEEIIFGDSEVTTGAVGDLQQITGLARQMVTTFGMS-DIGPWSLMDSSAQSDVIMRMMA 606

Query: 156 --KLSHRTRYEIDEEVNFLLDEAWNMA 180
              +S +   +ID  V  L D A+ +A
Sbjct: 607 RNSMSEKLAEDIDSAVKKLSDSAYEIA 633


>AT1G06430.1 | Symbols: FTSH8 | FTSH protease 8 |
           chr1:1960214-1962525 REVERSE LENGTH=685
          Length = 685

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 44  HESGHAVAVAVLSGVEKLCNATVVPGPDYLGCTRYL-STSSHLMTRKKLIDEMVISMAAS 102
           HE GHA+   +  G + +   T++P     G T ++ S    L+++++L   +V  +   
Sbjct: 481 HEVGHAICGTLTPGHDAVQKVTLIPRGQARGLTWFIPSDDPTLISKQQLFARIVGGLGGR 540

Query: 103 SAEGEILGPEFVCTGASGDFHEARIIARDIVAMYGMSAGFGP-AYFDFENLSNL------ 155
           +AE  I G   V TGA  D  +   +A+ +V  +GMS   GP +  D    S++      
Sbjct: 541 AAEEVIFGESEVTTGAVSDLQQITGLAKQMVTTFGMSE-IGPWSLMDSSEQSDVIMRMMA 599

Query: 156 --KLSHRTRYEIDEEVNFLLDEAWNMA 180
              +S +   +ID  V  L D+A+ +A
Sbjct: 600 RNSMSEKLANDIDTAVKTLSDKAYEIA 626