Miyakogusa Predicted Gene

Lj0g3v0324999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324999.1 Non Chatacterized Hit- tr|I1JRI0|I1JRI0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.27930
PE,92.05,0,SUBFAMILY NOT NAMED,NULL; TRAFFICKING PROTEIN PARTICLE
COMPLEX SUBUNIT 6B,NULL; Ligand-binding domai,CUFF.22086.1
         (176 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05000.1 | Symbols:  | Transport protein particle (TRAPP) com...   304   2e-83

>AT3G05000.1 | Symbols:  | Transport protein particle (TRAPP)
           component | chr3:1387444-1388697 REVERSE LENGTH=173
          Length = 173

 Score =  304 bits (778), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/176 (81%), Positives = 160/176 (90%), Gaps = 3/176 (1%)

Query: 1   MVREVSESCVDSLLTEMVSCYCNRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60
           M REV+ESCVD++L EMV+ Y  RFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS
Sbjct: 1   MGREVAESCVDTMLMEMVAMYSGRFYANKPELAARRIEAIGYQVGHQLSERYTMERPRFS 60

Query: 61  DHLEAIKFICKDFWSEVFKKQVDNLKTNHRGTFVLQDNKFPWLSRMSVDPSAENVSSVED 120
           DHLEAIKFICKDFWSEVFKKQ+DNLKTNHRGTFVLQDNKF WLSR+S+DPS+EN    +D
Sbjct: 61  DHLEAIKFICKDFWSEVFKKQIDNLKTNHRGTFVLQDNKFRWLSRVSIDPSSEN--ETQD 118

Query: 121 NTSPTPESKAAQAMSMHLYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVCIKA 176
            ++P  ESKAAQA+SM+LYFPCGIIRG LSNLGIPCAVSADIS+LP CSFV+ +KA
Sbjct: 119 PSTPG-ESKAAQAVSMYLYFPCGIIRGVLSNLGIPCAVSADISSLPTCSFVIRVKA 173