Miyakogusa Predicted Gene

Lj0g3v0324989.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324989.1 Non Chatacterized Hit- tr|I3SBA3|I3SBA3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.47,0,Clavaminate synthase-like,NULL;
FE2OG_OXY,Oxoglutarate/iron-dependent dioxygenase; SUBFAMILY NOT
NAM,CUFF.22085.1
         (262 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20350.2 | Symbols:  | oxidoreductases | chr4:10988391-109897...   301   4e-82
AT4G20350.1 | Symbols:  | oxidoreductases | chr4:10988730-109897...   209   1e-54
AT1G31600.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    60   1e-09
AT1G31600.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    60   2e-09
AT1G31600.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    60   2e-09

>AT4G20350.2 | Symbols:  | oxidoreductases | chr4:10988391-10989733
           FORWARD LENGTH=241
          Length = 241

 Score =  301 bits (770), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 156/257 (60%), Positives = 180/257 (70%), Gaps = 17/257 (6%)

Query: 6   KLSCYKVGSLPTVFYVPDFITDSEETFLLHNIYGVNASKWKPMKNRRLQNWGGVVHEKGL 65
           +L  ++VG  PTVFY+P FITD E+T LL++IYG + SKWK +KNRRLQNWGG+VHEKGL
Sbjct: 2   ELERFRVGLTPTVFYIPGFITDEEQTQLLNHIYGASGSKWKTLKNRRLQNWGGMVHEKGL 61

Query: 66  LPQPLPPWLTNLTKRMYEELGLFPSPLNHVLINEYLPNQGIMPHQDGPAYFPVVAILSLG 125
           +PQ LPPWLT +T  ++E  GLFPS +NHVLINEY P+QGIMPHQDGPAYFPVVAILSLG
Sbjct: 62  VPQELPPWLTKITAEIHESSGLFPSAINHVLINEYHPDQGIMPHQDGPAYFPVVAILSLG 121

Query: 126 SPAVMDFTPHARLKLDSQDNTDKDSEGGTLEIGEEKWLDDHHPFSVLLMPRSLLIFKDQA 185
           SP VMDFTPH RL+        KD          E+       FSVLLMP+SLLIFKD A
Sbjct: 122 SPVVMDFTPHLRLR-SGDGYISKDQSPCAESCAPER-----DSFSVLLMPQSLLIFKDDA 175

Query: 186 YSDYLHGIQDSAVHCYDGVINETEALKYKESDGHHCSSEEALETIGKEECKNIPRTSNRV 245
           YSD+LHGI DS   CY+ V+NE EAL Y        S+EE     G    K   R   RV
Sbjct: 176 YSDFLHGISDSPTQCYNQVVNEAEALAY--------SNEEDSRKDGD---KIFHRDQTRV 224

Query: 246 SLTCRMVPKVHKNLFRF 262
           SLTCR+VPKV KNLFRF
Sbjct: 225 SLTCRLVPKVRKNLFRF 241


>AT4G20350.1 | Symbols:  | oxidoreductases | chr4:10988730-10989733
           FORWARD LENGTH=186
          Length = 186

 Score =  209 bits (533), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/193 (58%), Positives = 127/193 (65%), Gaps = 17/193 (8%)

Query: 70  LPPWLTNLTKRMYEELGLFPSPLNHVLINEYLPNQGIMPHQDGPAYFPVVAILSLGSPAV 129
           +PPWLT +T  ++E  GLFPS +NHVLINEY P+QGIMPHQDGPAYFPVVAILSLGSP V
Sbjct: 11  MPPWLTKITAEIHESSGLFPSAINHVLINEYHPDQGIMPHQDGPAYFPVVAILSLGSPVV 70

Query: 130 MDFTPHARLKLDSQDNTDKDSEGGTLEIGEEKWLDDHHPFSVLLMPRSLLIFKDQAYSDY 189
           MDFTPH RL+        KD          E+       FSVLLMP+SLLIFKD AYSD+
Sbjct: 71  MDFTPHLRLR-SGDGYISKDQSPCAESCAPER-----DSFSVLLMPQSLLIFKDDAYSDF 124

Query: 190 LHGIQDSAVHCYDGVINETEALKYKESDGHHCSSEEALETIGKEECKNIPRTSNRVSLTC 249
           LHGI DS   CY+ V+NE EAL Y        S+EE     G    K   R   RVSLTC
Sbjct: 125 LHGISDSPTQCYNQVVNEAEALAY--------SNEEDSRKDGD---KIFHRDQTRVSLTC 173

Query: 250 RMVPKVHKNLFRF 262
           R+VPKV KNLFRF
Sbjct: 174 RLVPKVRKNLFRF 186


>AT1G31600.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:11313376-11314944 REVERSE LENGTH=344
          Length = 344

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 67/255 (26%)

Query: 14  SLPTVFYVPDFITDSEETFLLHNIYGVNASKWKPMKNRRLQNWG-----GV--VHEKGLL 66
           ++P +F +PDF+T +EE  LL     V+A  W  +  RR+Q++G     G   V  K  L
Sbjct: 122 NIPGLFLLPDFVTVAEEQQLLA---AVDARHWIGLAKRRVQHYGYEFCYGTRNVDTKKRL 178

Query: 67  PQPLPPWLTNLTKRMYEELGLFPS--------PLNHVLINEYLPNQGIMPHQDGPAYFP- 117
            + LP +++ + +R+Y    LFP+         L+ + +NEY    G+ PH D  + F  
Sbjct: 179 GE-LPSFVSPILERIY----LFPNFDNGSASLNLDQLTVNEYPSGVGLSPHIDTHSAFED 233

Query: 118 VVAILSLGSPAVMDFTPHARLKLDSQDNTDKDSEGGTLEIGEEKWLDDHHPFSVLLMPRS 177
            +  LSL  P +M+F  ++ +       TD +  G +  I +  +L           PRS
Sbjct: 234 CIFSLSLAGPCIMEFRRYS-VSTWKASTTDAEKSGDSSCIKKALYLP----------PRS 282

Query: 178 LLIFKDQAYSDYLHGIQDSAVHCYDGVINETEALKYKESDGHHCSSEEALETIGKEECKN 237
           +L+   +A   + H I                         HH         I K + K 
Sbjct: 283 MLLLSGEARYAWNHYIP------------------------HH--------KIDKVKDKV 310

Query: 238 IPRTSNRVSLTCRMV 252
           I R+S RVS T R V
Sbjct: 311 IRRSSRRVSFTLRKV 325


>AT1G31600.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:11313376-11315199 REVERSE LENGTH=431
          Length = 431

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 67/255 (26%)

Query: 14  SLPTVFYVPDFITDSEETFLLHNIYGVNASKWKPMKNRRLQNWG-----GV--VHEKGLL 66
           ++P +F +PDF+T +EE  LL     V+A  W  +  RR+Q++G     G   V  K  L
Sbjct: 209 NIPGLFLLPDFVTVAEEQQLLA---AVDARHWIGLAKRRVQHYGYEFCYGTRNVDTKKRL 265

Query: 67  PQPLPPWLTNLTKRMYEELGLFPS--------PLNHVLINEYLPNQGIMPHQDGPAYFP- 117
            + LP +++ + +R+Y    LFP+         L+ + +NEY    G+ PH D  + F  
Sbjct: 266 GE-LPSFVSPILERIY----LFPNFDNGSASLNLDQLTVNEYPSGVGLSPHIDTHSAFED 320

Query: 118 VVAILSLGSPAVMDFTPHARLKLDSQDNTDKDSEGGTLEIGEEKWLDDHHPFSVLLMPRS 177
            +  LSL  P +M+F  ++ +       TD +  G +  I +          ++ L PRS
Sbjct: 321 CIFSLSLAGPCIMEFRRYS-VSTWKASTTDAEKSGDSSCIKK----------ALYLPPRS 369

Query: 178 LLIFKDQAYSDYLHGIQDSAVHCYDGVINETEALKYKESDGHHCSSEEALETIGKEECKN 237
           +L+   +A   + H I                         HH         I K + K 
Sbjct: 370 MLLLSGEARYAWNHYIP------------------------HH--------KIDKVKDKV 397

Query: 238 IPRTSNRVSLTCRMV 252
           I R+S RVS T R V
Sbjct: 398 IRRSSRRVSFTLRKV 412


>AT1G31600.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:11313376-11315199 REVERSE LENGTH=431
          Length = 431

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 110/255 (43%), Gaps = 67/255 (26%)

Query: 14  SLPTVFYVPDFITDSEETFLLHNIYGVNASKWKPMKNRRLQNWG-----GV--VHEKGLL 66
           ++P +F +PDF+T +EE  LL     V+A  W  +  RR+Q++G     G   V  K  L
Sbjct: 209 NIPGLFLLPDFVTVAEEQQLLA---AVDARHWIGLAKRRVQHYGYEFCYGTRNVDTKKRL 265

Query: 67  PQPLPPWLTNLTKRMYEELGLFPS--------PLNHVLINEYLPNQGIMPHQDGPAYFP- 117
            + LP +++ + +R+Y    LFP+         L+ + +NEY    G+ PH D  + F  
Sbjct: 266 GE-LPSFVSPILERIY----LFPNFDNGSASLNLDQLTVNEYPSGVGLSPHIDTHSAFED 320

Query: 118 VVAILSLGSPAVMDFTPHARLKLDSQDNTDKDSEGGTLEIGEEKWLDDHHPFSVLLMPRS 177
            +  LSL  P +M+F  ++ +       TD +  G +  I +          ++ L PRS
Sbjct: 321 CIFSLSLAGPCIMEFRRYS-VSTWKASTTDAEKSGDSSCIKK----------ALYLPPRS 369

Query: 178 LLIFKDQAYSDYLHGIQDSAVHCYDGVINETEALKYKESDGHHCSSEEALETIGKEECKN 237
           +L+   +A   + H I                         HH         I K + K 
Sbjct: 370 MLLLSGEARYAWNHYIP------------------------HH--------KIDKVKDKV 397

Query: 238 IPRTSNRVSLTCRMV 252
           I R+S RVS T R V
Sbjct: 398 IRRSSRRVSFTLRKV 412