Miyakogusa Predicted Gene

Lj0g3v0324949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324949.1 tr|Q9LTR6|Q9LTR6_ARATH Gb|AAF36750.1
OS=Arabidopsis thaliana PE=4 SV=1,30.74,2e-17,coiled-coil,NULL;
DUF1666,Protein of unknown function DUF1666; STRUCTURAL CONSTITUENT OF
RIBOSOME,NU,CUFF.22084.1
         (865 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39785.1 | Symbols:  | Protein of unknown function (DUF1666) ...   328   1e-89
AT5G39785.2 | Symbols:  | Protein of unknown function (DUF1666) ...   322   1e-87
AT1G69610.1 | Symbols:  | Protein of unknown function (DUF1666) ...   312   6e-85
AT3G20260.1 | Symbols:  | Protein of unknown function (DUF1666) ...   132   1e-30
AT1G73850.1 | Symbols:  | Protein of unknown function (DUF1666) ...   104   3e-22
AT3G01175.1 | Symbols:  | Protein of unknown function (DUF1666) ...    80   6e-15

>AT5G39785.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr5:15929257-15932215 FORWARD LENGTH=606
          Length = 606

 Score =  328 bits (841), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 172/402 (42%), Positives = 263/402 (65%), Gaps = 24/402 (5%)

Query: 486 WEHEDIVEQLKVELRNSRQGGLPXXXXXXXXXXXXSPKVVEKLRPLKIEEKLEYK--DQI 543
           WEH+D++EQLK+E++  +  G               PK++E L+P +IEE+ ++K  D I
Sbjct: 207 WEHQDLIEQLKMEMKKVKAIGGLTTILEEEEEDDDCPKIMEDLKPWRIEEEKKFKHVDTI 266

Query: 544 AEIEKVYKIYAEKMRKLDILNYQTMHALGLLHLKDPLKSISIPKSTISGAK--PVISQNL 601
            E+ K ++ Y E+MRKLDIL++Q  +ALGLL  K P ++ S   S  S      V S N+
Sbjct: 267 GEVHKFHRSYRERMRKLDILSFQKSYALGLLQSKSPQQATSTLGSNPSQTSFSSVFSVNI 326

Query: 602 WPRKAAKNISDPLLKLVHDLHRDLELVYVGQVCLSWEILCWQHQKAIELQEYDSQGSHRY 661
              KA K+  +P+++ V ++  +LE VYVGQ+CLSWEIL WQ++KAIEL E D  GS RY
Sbjct: 327 RLWKAKKSEIEPMVQFVKEIQGELENVYVGQMCLSWEILHWQYEKAIELLESDVYGSRRY 386

Query: 662 NHVAGEFQLFQVLVQRFIENEPFQGGPRIQNYVKNRCVIRNLLQVPAIKD----DSKGGE 717
           N VAGEFQ FQVL+QRF+ENEPF+  PR+Q+Y+K RCV+RNLLQ+P I++    D K G 
Sbjct: 387 NEVAGEFQQFQVLLQRFLENEPFE-EPRVQHYIKRRCVLRNLLQIPVIREDGNKDKKNGR 445

Query: 718 EED-------AIASGRLEDIIKESMRVFWEFVRADKDYGNV---VLKVPKHIGTDL-KDP 766
             D        I S +L +I++E++R+FW FVR DK   ++     +    I  D  +D 
Sbjct: 446 RRDYEENNDGVIKSDQLVEIMEETIRLFWRFVRCDKLTSSIHDQKSRTKSQIEPDHEEDS 505

Query: 767 AISNLLVDIRTQLQKKEKKLKDIVRIGNCIVKKFQKHHEDPLDHEQLV---AQVGLRLIS 823
               +  ++++QLQ KEK+L+D+++   CI+++FQKH E+    +Q++   +QV ++L++
Sbjct: 506 EDLEMFAEVKSQLQNKEKRLRDVLKSERCIIRRFQKHKEEDSTEDQVLHFFSQVDMKLVT 565

Query: 824 RVVNVSKLRKEQIIWCHEKLHRIKFLSRKIVQVEPSFLLFPC 865
           RV+N+SKL ++ ++WCH KL +I F++R++  ++PSF LFPC
Sbjct: 566 RVLNMSKLTRDHLVWCHNKLTKINFVNRRL-HLDPSFCLFPC 606


>AT5G39785.2 | Symbols:  | Protein of unknown function (DUF1666) |
           chr5:15929257-15932215 FORWARD LENGTH=607
          Length = 607

 Score =  322 bits (824), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/403 (42%), Positives = 262/403 (65%), Gaps = 25/403 (6%)

Query: 486 WEHEDIVEQLKVELRNSRQGGLPXXXXXXXXXXXXSPKVVEKLRPLKIEEKLEYK--DQI 543
           WEH+D++EQLK+E++  +  G               PK++E L+P +IEE+ ++K  D I
Sbjct: 207 WEHQDLIEQLKMEMKKVKAIGGLTTILEEEEEDDDCPKIMEDLKPWRIEEEKKFKHVDTI 266

Query: 544 AEIEKVYKIYAEKMRKLDILNYQTMHALGLLHLKDPLKSISIPKSTISGAK--PVISQNL 601
            E+ K ++ Y E+MRKLDIL++Q  +ALGLL  K P ++ S   S  S      V S N+
Sbjct: 267 GEVHKFHRSYRERMRKLDILSFQKSYALGLLQSKSPQQATSTLGSNPSQTSFSSVFSVNI 326

Query: 602 WPRKAAKNISDPLLKLVHDLHRDLELVYVGQVCLSWEILCWQHQKAIELQEYDSQGSHRY 661
              KA K+  +P+++ V ++  +LE VYVGQ+CLSWEIL WQ++KAIEL E D  GS RY
Sbjct: 327 RLWKAKKSEIEPMVQFVKEIQGELENVYVGQMCLSWEILHWQYEKAIELLESDVYGSRRY 386

Query: 662 NHVAGEFQLFQVLVQRFIENEPFQGGPRIQNYVKNRCVIRNLLQVPAIKD----DSKGGE 717
           N VAGEFQ FQVL+QRF+ENEPF+  PR+Q+Y+K RCV+RNLLQ+P I++    D K G 
Sbjct: 387 NEVAGEFQQFQVLLQRFLENEPFE-EPRVQHYIKRRCVLRNLLQIPVIREDGNKDKKNGR 445

Query: 718 EED-------AIASGRLEDIIKESMRVFWEFVRADKDYGNV---VLKVPKHIGTDL-KDP 766
             D        I S +L +I++E++R+FW FVR DK   ++     +    I  D  +D 
Sbjct: 446 RRDYEENNDGVIKSDQLVEIMEETIRLFWRFVRCDKLTSSIHDQKSRTKSQIEPDHEEDS 505

Query: 767 AISNLLVDIRTQLQK-KEKKLKDIVRIGNCIVKKFQKHHEDPLDHEQLV---AQVGLRLI 822
               +  ++++QLQ   EK+L+D+++   CI+++FQKH E+    +Q++   +QV ++L+
Sbjct: 506 EDLEMFAEVKSQLQNVSEKRLRDVLKSERCIIRRFQKHKEEDSTEDQVLHFFSQVDMKLV 565

Query: 823 SRVVNVSKLRKEQIIWCHEKLHRIKFLSRKIVQVEPSFLLFPC 865
           +RV+N+SKL ++ ++WCH KL +I F++R++  ++PSF LFPC
Sbjct: 566 TRVLNMSKLTRDHLVWCHNKLTKINFVNRRL-HLDPSFCLFPC 607


>AT1G69610.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr1:26186954-26189349 FORWARD LENGTH=636
          Length = 636

 Score =  312 bits (800), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 188/389 (48%), Positives = 249/389 (64%), Gaps = 24/389 (6%)

Query: 487 EHEDIVEQLKVELRNSRQGGLPXXXXXXXXXXXXSPKVVEKLRPLKIEEKL-EYKDQIAE 545
           EH D++E+LK ELR +R GGL             S   +++L+PLKIE K  ++KD+IAE
Sbjct: 262 EHSDVIEKLKTELRTARTGGL-------CTILEESETPLQELKPLKIEPKPDQHKDRIAE 314

Query: 546 IEKVYKIYAEKMRKLDILNYQTMHALGLLHLKDPLKSISIPKSTISGAKPVISQNLWPRK 605
           I KVYK YA KMRKLD+++ QTMH++ LL LKD  K     ++T    K  + QN+WP K
Sbjct: 315 IHKVYKNYAVKMRKLDVIDSQTMHSISLLKLKDSSKP---SRNTDKPPKSSLHQNIWPFK 371

Query: 606 AAKNISDPLLKLVHDLHRDLELVYVGQVCLSWEILCWQHQKAIELQEYDSQ-GSHRYNHV 664
                 DP  +LV +  RD E VYVGQVCLSWE+L WQ+ K +E   +DSQ  +++YN V
Sbjct: 372 KHTLECDPSERLVKEASRDFETVYVGQVCLSWEMLRWQYDKVLE---FDSQVTTYQYNLV 428

Query: 665 AGEFQLFQVLVQRFIENEPFQGGPRIQNYVKNRCVIRNLLQVPAIKDDSKGG-----EEE 719
           AGEFQLFQVL+QRF+ENEPFQ   R++ Y+KNR   +N LQ+P ++DD         E E
Sbjct: 429 AGEFQLFQVLLQRFVENEPFQNSSRVETYLKNRRHFQNFLQIPLVRDDRSSKKKCRYEGE 488

Query: 720 DAIASGRLEDIIKESMRVFWEFVRADKDYGNVVLKVPKHIGTDLKDPAISNLLVDIRTQL 779
            A+ +  L +II+ESM VFWEF+ ADKD    ++KV        +D     LL DIRT L
Sbjct: 489 FAVKTEMLREIIRESMSVFWEFLCADKDEFTSMMKVSHQTQVSPQDSLDLELLTDIRTHL 548

Query: 780 QKKEKKLKDIVRIGNCIVKKFQKHHEDP---LDHEQLVAQVGLRLISRVVNVSKLRKEQI 836
           QKKEKKLK+I R  +CIVKK +K+       +  E L+A++ LRL+SRV+ +SKL  E++
Sbjct: 549 QKKEKKLKEIQRSQSCIVKKLKKNESKSSIGVKDELLIAKIELRLVSRVMYMSKLTTEKL 608

Query: 837 IWCHEKLHRIKFLSRKIVQVEPSFLLFPC 865
            WC EKL +I F  RKI  +EP F L PC
Sbjct: 609 HWCQEKLEKISFNGRKI-HMEPYFSLLPC 636


>AT3G20260.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr3:7064190-7065751 REVERSE LENGTH=437
          Length = 437

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 170/358 (47%), Gaps = 55/358 (15%)

Query: 538 EYKDQIAE-------IEKVYKIYAEKMRKLDILNYQTMHALGL---------------LH 575
           E++D +AE        + VY+ Y E+M   D L+ Q +   G+                 
Sbjct: 105 EWRDVVAEGLQWWGGFDAVYEKYCERMLFFDRLSSQQLKETGIGIAPSPSTPSPRSASKK 164

Query: 576 LKDPLKSIS-----IPKSTISGAKPVISQNLWPRKAAKNISDPLLKLVHDLHRDLELVYV 630
           L  P + +S     +P+  I   +P              + DP        ++DLE  YV
Sbjct: 165 LSSPFRCLSLKKFDVPEEDIEHLQPT------------EVDDP--------YQDLETAYV 204

Query: 631 GQVCLSWEILCWQHQKAIELQEYDSQGSHRYNHVAGEFQLFQVLVQRFIENEPFQGGPRI 690
            Q+CL+WE L  Q+ +   L     +    YNH A  FQ F VL+QR+IENEPF+ G R 
Sbjct: 205 AQLCLTWEALHCQYTQLSHLISCQPETPTCYNHTAQLFQQFLVLLQRYIENEPFEQGSRS 264

Query: 691 QNYVKNRCVIRNLLQVPAIKDDSKGGEEEDA---IASGRLEDIIKESMRVFWEFVRADKD 747
           + Y + R  +  LLQ P I+   K   E+D    + +  L  +I+ S+  F  F++ DK 
Sbjct: 265 ELYARARNAMPKLLQAPKIQGSDKKEMEKDTGFMVLADDLIKVIESSILTFNVFLKMDKK 324

Query: 748 YGNVVLKVPKHIGTDLKDPAISNLLVDIRTQLQKKEKKLKDIVRIGNCIVKKFQKHHEDP 807
             N  + +  +   +  +     LLV  ++ + KK  K K++ +    + KK      + 
Sbjct: 325 KPNGGIHLFGNHNNNHVNSTTPLLLV--QSSIDKKRVKAKELSKKTKGLRKKSWPQTWEG 382

Query: 808 LDHEQLVAQVGLRLISRVVNVSKLRKEQIIWCHEKLHRIKFLSRKIVQVEPSFLLFPC 865
           +  + L A + ++L +RV+ +SK+ KEQ++WC EK+ ++ F + K+ Q  PS +LFPC
Sbjct: 383 V--QLLFAAIDIKLATRVLRMSKISKEQLLWCEEKMKKLNFSAGKL-QRHPSPILFPC 437


>AT1G73850.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr1:27767375-27770386 FORWARD LENGTH=635
          Length = 635

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 167/336 (49%), Gaps = 39/336 (11%)

Query: 549 VYKIYAEKMRKLDILNYQTMHALGLLHLKDPLKSISI-PKSTISGAKPVISQNLWPRK-- 605
           V++ Y E+M  L  ++ Q       LH  + LKSI + P+S        +S N   +K  
Sbjct: 317 VFQKYDEEMTFLTRISAQK------LHEAESLKSIMVEPRSISERIVHKLSSNGHKKKQK 370

Query: 606 --AAKNISDPLLKLVHDLHRDLELVYVGQVCLSWEILCWQHQKAIELQEYDSQGSHRYNH 663
                N S P      + + +LE  YV Q+CL+WE L W + K  E +   +Q S  +N 
Sbjct: 371 QYPGSNGSRP------NPYVELESAYVAQICLTWEALSWNY-KNFERKRSTTQRS--FND 421

Query: 664 V------AGEFQLFQVLVQRFIENEPFQGGPRIQNYVKNRCVIRNLLQVPAIKDDSKGGE 717
           V      A +F+ F +L+QR++ENEP++ G R + Y + R +   LL VP  +D  +  E
Sbjct: 422 VGCPAGIADQFRTFHILLQRYVENEPYEHGRRPEIYARMRTLAPKLLLVPEYQDYEEEEE 481

Query: 718 E--------EDAIASGRLEDIIKESMRVFWEFVRADKDYGNVVLKVPKHIGTDLKDPAIS 769
           +           I+S     I++E +R F  F++ADK+      K+ K      K   + 
Sbjct: 482 KEDENEEGFRSRISSASFLMIMEECIRTFMNFLQADKE--KPCQKIIKAFFGRSKRGPVD 539

Query: 770 NLLVDIRTQLQKKEKKLKDIVRIGNCIVKKFQKHHEDPLDHEQLVAQVGLRLISRVVNVS 829
             LV +  ++  K+K     +R G   ++K +   E+ +  E L+  + L+++SRV+ ++
Sbjct: 540 PTLVHLMKKVNTKKKTKLKEMRRGGKYMRKKKMSIEEEM--EILMGLIDLKVVSRVLRMN 597

Query: 830 KLRKEQIIWCHEKLHRIKFL-SRKIVQVEPSFLLFP 864
           ++ +E + WC EK+ ++K +   K++Q + + L FP
Sbjct: 598 EMNEENLHWCEEKMSKVKIIQGGKVLQRDSTPLFFP 633


>AT3G01175.1 | Symbols:  | Protein of unknown function (DUF1666) |
           chr3:59484-60845 FORWARD LENGTH=401
          Length = 401

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/174 (34%), Positives = 89/174 (51%), Gaps = 32/174 (18%)

Query: 540 KDQIAEIEKVYKIYAEKMRKLDILNYQTMHALGLLHLKDPLKSISIPKSTISGAKPVISQ 599
           + Q  E + VYK Y E+MR  DIL+    + L +                I+      S 
Sbjct: 253 QTQGVEDDHVYKKYCERMRWYDILSRDRSYGLNV----------------ITNQLTASSL 296

Query: 600 NLWPRKAAKNISDPLLKLVHDLHRDLELVYVGQVCLSWEILCWQHQKAI---ELQEYDSQ 656
           +LW + A K I          + +DLELVYV QVCLSWE L  QHQ  +        DS+
Sbjct: 297 SLWGKTAEKRIK-------QSMKKDLELVYVAQVCLSWEAL--QHQYILVRDSSNPADSR 347

Query: 657 GSHRY-NHVAGEFQLFQVLVQRFIENEPFQGGPRIQNYVKNRCVIRNLLQVPAI 709
           G  R+ + ++ EFQ FQVL++RF+E+E  +G  R+ ++V+ R  + +  QVP +
Sbjct: 348 G--RFDDDISREFQNFQVLLERFLEDERCEGK-RVLSFVQRRFELISFFQVPRL 398