Miyakogusa Predicted Gene

Lj0g3v0324879.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324879.1 Non Chatacterized Hit- tr|K4AQG4|K4AQG4_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,28.39,0.00000000000002,A Receptor for Ubiquitination
Targets,F-box domain, cyclin-like; F-box domain,F-box domain,
cyclin-l,CUFF.22088.1
         (349 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    84   1e-16
AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    81   9e-16
AT3G07870.1 | Symbols:  | F-box and associated interaction domai...    67   2e-11
AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction ...    67   2e-11
AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction ...    67   2e-11
AT3G17280.1 | Symbols:  | F-box and associated interaction domai...    63   3e-10
AT3G16210.1 | Symbols:  | F-box family protein | chr3:5494533-54...    60   2e-09
AT4G22390.1 | Symbols:  | F-box associated ubiquitination effect...    58   1e-08
AT3G17480.1 | Symbols:  | F-box and associated interaction domai...    54   2e-07
AT3G17710.1 | Symbols:  | F-box and associated interaction domai...    51   1e-06
AT4G04690.1 | Symbols:  | F-box and associated interaction domai...    50   2e-06

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 138/327 (42%), Gaps = 64/327 (19%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQ--------RAAPSLLFADSHAIRTIDLEG- 115
           P KSI RF+ V KL+ +L SDP FA +H          R+    L   SH + ++D    
Sbjct: 49  PAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIVSSHNLYSLDFNSI 108

Query: 116 --------------PLQ------SHRVSQPINCHFLSNYHDL------SLPRNCISIHGS 149
                         PL+      S  +   +  H   +   +      S  RN + I GS
Sbjct: 109 GDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSYRRNWVEIVGS 168

Query: 150 CRGFLLITWIRNIGYQHPWNDSLYLWNPSTHVHKPILS-----SPVVDTNVFDHLYGFGY 204
             G + I+         P   +++L+NP+T   K +       S   + + F   YGFG+
Sbjct: 169 SNGLVCIS---------PGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNF-QTYGFGF 218

Query: 205 HSLTDDYLVVRVPVTDCYQPTHLPDVQFFSLRANMWKYTEGVDLPPLTTIDTCTGLLFNE 264
             LTDDY +V++  T       + D   +SL+A+ W+    ++        T +G+ FN 
Sbjct: 219 DGLTDDYKLVKLVAT----SEDILDASVYSLKADSWRRICNLNYEHNDGSYT-SGVHFNG 273

Query: 265 AIHWVVTNWVDGVTTMFIIAFDLMEKRLLEIPMPHGL-----LFPCFELW-VHGRFLSLS 318
           AIHWV T          ++AFD+  +   E+P+P         F  F +  ++GR   ++
Sbjct: 274 AIHWVFTESRH--NQRVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVN 331

Query: 319 IMQRDGTCEIWVMKKYKVQTSWTKTLV 345
               D   +IWVM +Y    SW++  +
Sbjct: 332 SCY-DVHDDIWVMSEYGEAKSWSRIRI 357


>AT3G23880.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:8622061-8623155
           REVERSE LENGTH=364
          Length = 364

 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 133/296 (44%), Gaps = 39/296 (13%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHA-IRTIDLEGPLQSHRVS 123
           PVKS+ RFK VC  WRSLIS+ LFA  H      +L+   S A   T    G + + R  
Sbjct: 27  PVKSLTRFKCVCSSWRSLISETLFALKH------ALILETSKATTSTKSPYGVITTSRYH 80

Query: 124 QPINC-HFLSN-------YHDLS-LPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYL 174
               C H L N        HD   L R+   + G+C G         + +   ++ SLYL
Sbjct: 81  LKSCCIHSLYNASTVYVSEHDGELLGRDYYQVVGTCHGL--------VCFHVDYDKSLYL 132

Query: 175 WNPSTHVHKPILSSPVVDTNVFDHL--YGFGYHSLTDDYLVVRVPVTDCYQPTHLPDVQ- 231
           WNP+  + +  LSS  ++T+  + +  YGFGY    DDY VV +      Q  H   ++ 
Sbjct: 133 WNPTIKLQQR-LSSSDLETSDDECVVTYGFGYDESEDDYKVVAL-----LQQRHQVKIET 186

Query: 232 -FFSLRANMWKYTEGVDLPPLTTIDTCTGLLFNEAIHWVVTNWVDGVTTMFIIAFDLMEK 290
             +S R  +W+         +    + +G+  N  ++W  T+     ++  II++D+   
Sbjct: 187 KIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATS---SSSSWTIISYDMSRD 243

Query: 291 RLLEIPMPHGLLFPCFELWVHG--RFLSLSIMQRDGTCEIWVMKKYKVQTSWTKTL 344
              E+P P      CF + +      LS+    +    ++WVMK++    SW+K L
Sbjct: 244 EFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLL 299


>AT3G07870.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:2510871-2512124
           FORWARD LENGTH=417
          Length = 417

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 130/312 (41%), Gaps = 50/312 (16%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPS----LLFADS---HAIRTIDLEGPL 117
           P+ SI R   VC+ WRS+++      L    ++P+    LL  DS   + +  +DL    
Sbjct: 41  PISSIARLMFVCRSWRSVLTQ--HGRLSSSSSSPTKPCLLLHCDSPIRNGLHFLDLSE-- 96

Query: 118 QSHRV-SQPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWN 176
           +  R+ ++     F S     S+P     + GSC G L ++          +NDSLYL+N
Sbjct: 97  EEKRIKTKKFTLRFAS-----SMPE--FDVVGSCNGLLCLS-------DSLYNDSLYLYN 142

Query: 177 PST--HVHKPILSSPVVDTNVFDHLYGFGYHSLTDDYLVVRVPV--------TDCYQPT- 225
           P T   +  P  S+   D  +   ++GFG+H +T +Y V+++             Y+   
Sbjct: 143 PFTTNSLELPECSNKYHDQEL---VFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRG 199

Query: 226 ----HLPDVQFFSLRANMWKYT---EGVDLPPLTTIDTCTGLLFNEAIHWVVTNWVDGVT 278
                  +VQ  +L +     +     +   P   +   +  L N  +H+ VT     V 
Sbjct: 200 RIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHF-VTRPRRHVP 258

Query: 279 TMFIIAFDLMEKRLLEIPMPH--GLLFPCFELWVHGRFLSLSIMQRDGTCEIWVMKKYKV 336
               ++FDL ++   EIP P   GL      L      L   +    G  +IWVMK Y V
Sbjct: 259 DRKFVSFDLEDEEFKEIPKPDCGGLNRTNHRLVNLKGCLCAVVYGNYGKLDIWVMKTYGV 318

Query: 337 QTSWTKTLVLST 348
           + SW K   + T
Sbjct: 319 KESWGKEYSIGT 330


>AT4G12560.2 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 130/310 (41%), Gaps = 51/310 (16%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQ 124
           P K++VR +A+ K    LI+DP F   H  R    +L    H +  I L G L+ + V  
Sbjct: 17  PAKTLVRCRALSKPCYHLINDPDFIESHLHR----VLQTGDHLM--ILLRGALRLYSV-- 68

Query: 125 PINCHFLSNYHDLSLPRNC---ISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNPST-H 180
             +   L +  D+  P        + GS  G         IG  +   D L ++NPST  
Sbjct: 69  --DLDSLDSVSDVEHPMKRGGPTEVFGSSNGL--------IGLSNSPTD-LAVFNPSTRQ 117

Query: 181 VHKPILSS---PVVDTNVFDHLYGFGYHSLTDDYLVVRVPVTDCYQPTHLP-----DVQF 232
           +H+   SS   P   +      YG GY S++DDY VVR+          L      +V+ 
Sbjct: 118 IHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKV 177

Query: 233 FSLRANMWKYTEGVDLPPLTTID------------TCTGLLFNEAIHWVVTNWVDGVTTM 280
           FSL+ N WK  E V     ++I                G+L   ++HWV+      +   
Sbjct: 178 FSLKKNSWKRIESV----ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN 233

Query: 281 FIIAFDLM--EKRLLEIP--MPHGLLFPCFELWVHGRFLSLSIMQRDGTCEIWVMKKYKV 336
            I+ FDL   E  ++  P  + +G +    ++ V    L L         ++W+MK+Y V
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNV 293

Query: 337 QTSWTKTLVL 346
           + SWTK   +
Sbjct: 294 RDSWTKVFTV 303


>AT4G12560.1 | Symbols: CPR30 | F-box and associated interaction
           domains-containing protein | chr4:7441815-7443157
           FORWARD LENGTH=413
          Length = 413

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 130/310 (41%), Gaps = 51/310 (16%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQ 124
           P K++VR +A+ K    LI+DP F   H  R    +L    H +  I L G L+ + V  
Sbjct: 17  PAKTLVRCRALSKPCYHLINDPDFIESHLHR----VLQTGDHLM--ILLRGALRLYSV-- 68

Query: 125 PINCHFLSNYHDLSLPRNC---ISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNPST-H 180
             +   L +  D+  P        + GS  G         IG  +   D L ++NPST  
Sbjct: 69  --DLDSLDSVSDVEHPMKRGGPTEVFGSSNGL--------IGLSNSPTD-LAVFNPSTRQ 117

Query: 181 VHKPILSS---PVVDTNVFDHLYGFGYHSLTDDYLVVRVPVTDCYQPTHLP-----DVQF 232
           +H+   SS   P   +      YG GY S++DDY VVR+          L      +V+ 
Sbjct: 118 IHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKV 177

Query: 233 FSLRANMWKYTEGVDLPPLTTID------------TCTGLLFNEAIHWVVTNWVDGVTTM 280
           FSL+ N WK  E V     ++I                G+L   ++HWV+      +   
Sbjct: 178 FSLKKNSWKRIESV----ASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFN 233

Query: 281 FIIAFDLM--EKRLLEIP--MPHGLLFPCFELWVHGRFLSLSIMQRDGTCEIWVMKKYKV 336
            I+ FDL   E  ++  P  + +G +    ++ V    L L         ++W+MK+Y V
Sbjct: 234 LIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNV 293

Query: 337 QTSWTKTLVL 346
           + SWTK   +
Sbjct: 294 RDSWTKVFTV 303


>AT3G17280.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:5903453-5904613
           REVERSE LENGTH=386
          Length = 386

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 93/241 (38%), Gaps = 31/241 (12%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTI--DLEGPLQSHRV 122
           P KSI + K  CK W +L  DP F      +AA   +F  +H + +I  D+ G  + + V
Sbjct: 20  PTKSIPKLKTTCKKWYALFKDPKFVEKKLGKAARETVFLMNHEVNSISVDIHGIPKGYSV 79

Query: 123 SQPINCHF-LSNYHDLSLPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNPSTHV 181
           S        +    DL + R    IH  C G  L   +         N  L +WNP T  
Sbjct: 80  SMDFTGTLTIPEGSDLEIFR----IH-HCNGLFLCATM---------NCRLVVWNPCTGQ 125

Query: 182 HKPILSSPVVDTNVFDHLYGFG----YHSLTDDYLVVRVPVTDCYQPTHLPDVQFFSLRA 237
              I+     D+   D +Y  G      S    Y ++R     C      P  + +   +
Sbjct: 126 ITWIIPRTRYDS---DDIYALGCGDDKSSSLHSYKILRC----CDDNQKKPVSEIYDFSS 178

Query: 238 NMWKYTEGVDLPPLTTIDTCTGLLFNEAIHWVVTNWVDGVTTMFIIAFDLMEKRLLEIPM 297
           + W+  +GV          C G+   E+ +W  ++  +     FI+ FD   +R   + +
Sbjct: 179 SSWRVLDGV---TANCFIECNGVALKESAYWYASDKRETPKGKFILRFDFATERFARLCL 235

Query: 298 P 298
           P
Sbjct: 236 P 236


>AT3G16210.1 | Symbols:  | F-box family protein |
           chr3:5494533-5495615 REVERSE LENGTH=360
          Length = 360

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 98/237 (41%), Gaps = 37/237 (15%)

Query: 66  VKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEG--PLQSHRVS 123
           +K + RF+ VCK WR LI+DP F   +   +    +         +D+EG  P+ ++++ 
Sbjct: 19  MKDLARFRCVCKTWRDLINDPGFTETYRDMSPAKFVSFYDKNFYMLDVEGKHPVITNKLD 78

Query: 124 QPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNPSTHVHK 183
            P++   +           C+ +H  C G L +T           N +L +WNP +   K
Sbjct: 79  FPLDQSMIDE-------STCV-LH--CDGTLCVTLK---------NHTLMVWNPFSKQFK 119

Query: 184 PILSSPVV--DTNVFDHLYGFGYHSLTDDYLVVRVPVTDCYQPTHLPDVQFFSLRANMWK 241
            I+ +P +  D+N+     GFGY  + DDY VV            +     F  R   W 
Sbjct: 120 -IVPNPGIYQDSNIL----GFGYDPVHDDYKVVTF-----IDRLDVSTAHVFEFRTGSWG 169

Query: 242 YTEGVDLPPLTTIDTCTGLLFNEAIHWVVTNWVDGVTTMFIIAFDLMEKRLLEIPMP 298
            +  +  P     D   G   ++ ++W+           FI+ F+L      ++P+P
Sbjct: 170 ESLRISYPDWHYRDR-RGTFLDQYLYWIAYR---SSADRFILCFNLSTHEYRKLPLP 222


>AT4G22390.1 | Symbols:  | F-box associated ubiquitination effector
           family protein | chr4:11813757-11815074 REVERSE
           LENGTH=402
          Length = 402

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 121/297 (40%), Gaps = 43/297 (14%)

Query: 68  SIVRFKAVCKLWRSLISDPLFASLHFQRAAPS-----LLFADSHAIRTIDLEGPLQSHRV 122
           ++V+ + + K   SLI  P F S H +R   +     +L      +RT++L+ P     +
Sbjct: 20  TLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILLRGPRLLRTVELDSPENVSDI 79

Query: 123 SQPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNPSTH-V 181
             P+     +             + GS  G         IG  +   D L ++NPST  +
Sbjct: 80  PHPLQAGGFTE------------VFGSFNGV--------IGLCNSPVD-LAIFNPSTRKI 118

Query: 182 HK-PI--LSSPVVDTNVFDHLYGFGYHSLTDDYLVVRV---PVTDCYQPTHLP-DVQFFS 234
           H+ PI  +  P  D       YG GY S+ DD+ VVR+    + +  +    P +V+ FS
Sbjct: 119 HRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFS 178

Query: 235 LRANMWKYTEGVDLPPLTTID--------TCTGLLFNEAIHWVVTNWVDGVTTMFIIAFD 286
           L+ N WK    +    +  I            G++ N  +HW++      +    II +D
Sbjct: 179 LKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYD 238

Query: 287 LMEKRLLEIPMPHGLLFP-CFELWVHGRFLSLSIMQRDGTCEIWVMKKYKVQTSWTK 342
           L    +  +  P  L      ++ V    + L         ++WV+K+Y+   SWTK
Sbjct: 239 LASDDIGVLSFPQELYIEDNMDIGVLDGCVCLMCYDEYSHVDVWVLKEYEDYKSWTK 295


>AT3G17480.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:5983199-5984320
           FORWARD LENGTH=373
          Length = 373

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 123/313 (39%), Gaps = 69/313 (22%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQ 124
           P  S+VR ++ CK W ++++D  F   HF  A                L+  L+S RVS 
Sbjct: 24  PATSLVRLRSTCKQWNAILNDRRFIKKHFDTAEKEY------------LDMLLRSLRVSS 71

Query: 125 -PINCHFLSNYHDLSLP-RNCISIHG--------------SCRGFLLITWIRNIGYQHPW 168
             +N H L +  D S+  +  +++ G               C G LL T    I      
Sbjct: 72  MSVNLHGLHDNIDPSIELKRELNLKGLLCNSGKVESFEVFHCNGLLLFTNTSTI------ 125

Query: 169 NDSLYLWNPSTHVHKPILSSPVVDTNVFDHLYGFGYH--SLTDDYLVVRVPVTDCYQPTH 226
                +WNP T   K I +      N   H Y  GY   +L  DY ++R         T+
Sbjct: 126 ----VVWNPCTGQTKWIQTESA---NTRYHKYALGYENKNLCRDYKILRF----LDDGTN 174

Query: 227 LPDVQFFSLRANMWKYTEGVDLPPLTTIDTCTGLLFNEAIHWVVTN--WVDG-VTTMFII 283
             +++ +   ++ W+  + V++     I +  G+      +W+V +   VDG +   F+ 
Sbjct: 175 F-ELEIYEFNSSSWRVLDSVEIDFELDIGS-QGMSVKGNTYWIVIDDHEVDGELVNCFLT 232

Query: 284 AFDLMEKRLLEIPMPHGLLFPCFELW---------VHGRFLSLSIMQRDG-TCEIWVMKK 333
           +FD   +R      PH  L P    W         V    LS+   + D  T EIWV   
Sbjct: 233 SFDFTRERF----GPHVCL-PFQTSWYSDVISLSSVREERLSVLFHEEDSLTMEIWVTND 287

Query: 334 Y--KVQTSWTKTL 344
               + TSW+K L
Sbjct: 288 ITDTIVTSWSKFL 300


>AT3G17710.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr3:6055597-6056703
           FORWARD LENGTH=368
          Length = 368

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 21/116 (18%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLF-ADSHAIRT--IDLEGPLQSHR 121
           P +S+VRF+ VCK W  L SD  F   H  RA P  +F  +S  + +  IDL G ++   
Sbjct: 19  PPRSLVRFRTVCKHWNGLFSDKRFVKKHLVRARPQFIFLTESKKMYSIEIDLGGTIEVRE 78

Query: 122 VSQPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNP 177
           V    +C          + +N  +I  +C G L         ++  W   + +WNP
Sbjct: 79  VPYDFHCQ--------PMKKNFTTIM-ACDGLL---------FRDFWKQGVAVWNP 116


>AT4G04690.1 | Symbols:  | F-box and associated interaction
           domains-containing protein | chr4:2373999-2375135
           REVERSE LENGTH=378
          Length = 378

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 26/224 (11%)

Query: 65  PVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRTIDLEGPLQSHRVSQ 124
           P +S+ RFK+ CK W  +I+   F   H   +    +  D H  +T+ +  P+       
Sbjct: 24  PAESLNRFKSTCKQWYGIITSKRFMYNHLDHSPERFIRIDDH--KTVQIMDPMTGIFSDS 81

Query: 125 PINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWIRNIGYQHPWNDSLYLWNPSTHVHKP 184
           P+   F S +   S+      +H  C G +L     +  Y+     +L +WNP T   K 
Sbjct: 82  PVPDVFRSPHSFASM------VH--CDGLMLCI-CSDSSYERTREANLAVWNPVT---KK 129

Query: 185 ILSSPVVDTNVFDHLYGFGY-HSLTDDYLVVRVPVTDCYQPTHLPDVQFFSLRANMWKYT 243
           I     +D+      +G GY ++  ++Y +VR      +  T   + + +  +++ W+  
Sbjct: 130 IKWIEPLDSYYETDYFGIGYDNTCRENYKIVRFSGPMSFDDT---ECEIYEFKSDSWR-- 184

Query: 244 EGVDLPPLTTIDTCTGLLFNEAIHWVVTNWVDGVTTMFIIAFDL 287
             +D         C G+     ++W+           FI+ FD 
Sbjct: 185 -TLDTKYWDVYTQCRGVSVKGNMYWIA-----DTKEKFILRFDF 222