Miyakogusa Predicted Gene

Lj0g3v0324319.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324319.1 tr|A4RQZ8|A4RQZ8_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_86096,30.69,0.0000000000003,no description,WD40/YVTN
repeat-like-containing domain; WD_REPEATS_1,WD40 repeat, conserved
site; co,CUFF.22034.1
         (683 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G00800.1 | Symbols:  | transducin family protein / WD-40 repe...   387   e-107

>AT4G00800.1 | Symbols:  | transducin family protein / WD-40 repeat
           family protein | chr4:337114-345581 REVERSE LENGTH=1913
          Length = 1913

 Score =  387 bits (994), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/343 (56%), Positives = 229/343 (66%), Gaps = 7/343 (2%)

Query: 341 HASTGLHLEEGAAAQPMRLEGVRRGSTTLGYFDVDADNAVSRVISSHTFRREHGSAQVLA 400
            A TGLH EEGAAAQPMRLEGV+ GST LGYFDVDADN +SR ISS  F+R+HGS QVLA
Sbjct: 374 QAYTGLHWEEGAAAQPMRLEGVKIGSTNLGYFDVDADNVISRTISSQAFKRDHGSPQVLA 433

Query: 401 VHANYIAVGMAKGLIVVVPSKYSIHHADNTDGKMLMLAIQGDRSHAPVTSMSFNQQGDLL 460
           VH NYIAVG +KG+IVVVPSKYS  HAD  + KM+ L +QG+RS +PVTS+ FNQ G LL
Sbjct: 434 VHLNYIAVGTSKGVIVVVPSKYSSDHADQMESKMIWLGLQGERSQSPVTSVCFNQIGSLL 493

Query: 461 LAGYGDGHVTFWDVQKGVVAKVINGEHTTPVVHILFLGQDPQNNRQFKAVTGDCKGLVLL 520
           LAGYGDGHVT WD+Q+  +AKVI  EHT PVV+  FLG+D Q +RQFK +T D KG+V  
Sbjct: 494 LAGYGDGHVTVWDMQRASIAKVIT-EHTAPVVYAFFLGRDSQGSRQFKVITSDTKGVVFK 552

Query: 521 HSISVVPLLNRFNIKSQCLLDGQRTGLVLSASPLIFDEFSGSASPYSQGNTXXXXXXXXX 580
           HS S   LLN + +++QCLLDGQ+ G VLSASPL  + F  S      GN+         
Sbjct: 553 HSFSYARLLNMYTVETQCLLDGQKNGTVLSASPLPDENFGSSLVSSKGGNSAVPSSSISS 612

Query: 581 XXXXXXXXXXXWKLFNXXXXXXXXXXXXXXTHQTALVVRLSPKLEVYAQISRPDGIREGS 640
                      WKLFN              T+QT LVV+L P LEVYAQ+ RP+G+REGS
Sbjct: 613 MMGGVVGVGSTWKLFNEDSTSVEEGVVIFATYQTGLVVKLIPNLEVYAQLPRPEGVREGS 672

Query: 641 MPYTAWKYMAQXXXXXXXXXXXXXARVSLLAIAWERKVQVAKL 683
           MPYTAW+   +              RVS L IAW+R+VQVAKL
Sbjct: 673 MPYTAWRRSTENYSKEAED------RVSFLVIAWDRRVQVAKL 709