Miyakogusa Predicted Gene

Lj0g3v0324239.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324239.1 Non Chatacterized Hit- tr|I3T9S6|I3T9S6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,95.96,0,seg,NULL;
Large family of predicted nucleotide-binding,Nucleotide binding
protein, PINc; UNCHARACTER,CUFF.22062.1
         (198 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46230.1 | Symbols:  | PIN domain-like family protein | chr2:...   302   9e-83
AT2G46230.2 | Symbols:  | PIN domain-like family protein | chr2:...   251   2e-67
AT1G26530.1 | Symbols:  | PIN domain-like family protein | chr1:...   223   5e-59
AT2G34570.1 | Symbols: MEE21 | PIN domain-like family protein | ...    54   6e-08

>AT2G46230.1 | Symbols:  | PIN domain-like family protein |
           chr2:18984459-18985850 REVERSE LENGTH=196
          Length = 196

 Score =  302 bits (774), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 147/197 (74%), Positives = 162/197 (82%), Gaps = 2/197 (1%)

Query: 1   MGKAKKGPKFAVRKKLVTSKAIKNYXXXXXXXXXXXXXXXXXXRNIPSYSSALFFQYNTA 60
           MGKAKK  KFAV KK+++ KA+K+Y                  RN+PS  + LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTELP--RNVPSVPAGLFFSYNST 58

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELEKLGQKYRVALR
Sbjct: 59  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 118

Query: 121 IAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKH 180
           IAKDP FER+ C HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T  
Sbjct: 119 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTNR 178

Query: 181 KYSIERLPEATIGGAPR 197
           KYSIE+LPEAT+GGAPR
Sbjct: 179 KYSIEKLPEATLGGAPR 195


>AT2G46230.2 | Symbols:  | PIN domain-like family protein |
           chr2:18984694-18985850 REVERSE LENGTH=181
          Length = 181

 Score =  251 bits (641), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 136/169 (80%), Gaps = 2/169 (1%)

Query: 1   MGKAKKGPKFAVRKKLVTSKAIKNYXXXXXXXXXXXXXXXXXXRNIPSYSSALFFQYNTA 60
           MGKAKK  KFAV KK+++ KA+K+Y                  RN+PS  + LFF YN+ 
Sbjct: 1   MGKAKKPQKFAVVKKMISHKALKHYKEEVLNPNKKDLTELP--RNVPSVPAGLFFSYNST 58

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGM DCLYA CTPCITDCVMAELEKLGQKYRVALR
Sbjct: 59  LVPPYRVLVDTNFINFSIQNKIDLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALR 118

Query: 121 IAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKI 169
           IAKDP FER+ C HKGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRK+
Sbjct: 119 IAKDPHFERLPCIHKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKV 167


>AT1G26530.1 | Symbols:  | PIN domain-like family protein |
           chr1:9165890-9167298 FORWARD LENGTH=178
          Length = 178

 Score =  223 bits (569), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 118/197 (59%), Positives = 137/197 (69%), Gaps = 20/197 (10%)

Query: 1   MGKAKKGPKFAVRKKLVTSKAIKNYXXXXXXXXXXXXXXXXXXRNIPSYSSALFFQYNTA 60
           MG+ KK  KFAV K +++ KA+K+Y                  RN+PS  S LFF +N++
Sbjct: 1   MGRTKKPQKFAVMKMMISHKALKHYKEEVLNPNKKDLTELP--RNVPSVPSGLFFSHNSS 58

Query: 61  LGPPYRVLVDTNFINFSIQNKLDLEKGMMDCLYAKCTPCITDCVMAELEKLGQKYRVALR 120
           L PPYRVLVDTNFINFSIQNK+DLEKGMM                  + K+   Y     
Sbjct: 59  LVPPYRVLVDTNFINFSIQNKIDLEKGMM----------------VFVRKMHSLYYGL-- 100

Query: 121 IAKDPRFERILCTHKGTYADDCLVERVTQHKCYIVATCDRDLKRRIRKIPGVPIMYITKH 180
           IAKDPRFER+ C  KGTYADDCLV+RVTQHKC+IVATCDRDLKRRIRKIPGVPIMY+T+ 
Sbjct: 101 IAKDPRFERLPCVLKGTYADDCLVDRVTQHKCFIVATCDRDLKRRIRKIPGVPIMYVTQR 160

Query: 181 KYSIERLPEATIGGAPR 197
           KYSIE+LPEATIGGAPR
Sbjct: 161 KYSIEKLPEATIGGAPR 177


>AT2G34570.1 | Symbols: MEE21 | PIN domain-like family protein |
           chr2:14563048-14564681 REVERSE LENGTH=281
          Length = 281

 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 65/129 (50%), Gaps = 10/129 (7%)

Query: 54  FFQYNTALGPPYRVLVDTNFINFSIQNKLD-LEKGMMDCLYAKCTPCITDCVMAELEKLG 112
           FF        PY+VL D  F++  + N++   +  + + L        T CV+AELEKLG
Sbjct: 15  FFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKLFTTRCVIAELEKLG 74

Query: 113 QKYRVALRIAKDPRFERILCTH-KGTYADDCLVERV----TQHKCYIVATCDRDLKRRIR 167
           + +  +L  A+        C H +   AD+CL E +    T+H  + + T D + +R+++
Sbjct: 75  KDFAESLEAAQT--LNTATCEHEEAKTADECLSEVIGVQNTEH--FFLGTQDAEFRRKLQ 130

Query: 168 KIPGVPIMY 176
           +   VP+++
Sbjct: 131 QESIVPLVF 139