Miyakogusa Predicted Gene

Lj0g3v0324189.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324189.2 tr|H8WVC7|H8WVC7_LOTJA E3 ubiquitin ligase-like
protein (Fragment) OS=Lotus japonicus GN=SINA5 PE=2 ,100,0,SEVEN IN
ABSENTIA HOMOLOG,Seven-in-absentia protein, sina; TRAF
domain-like,TRAF-like; ZF_SIAH,Zinc ,CUFF.22053.2
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis...   301   2e-82
AT2G41980.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...   295   9e-81
AT3G61790.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...   265   8e-72
AT5G53360.1 | Symbols:  | TRAF-like superfamily protein | chr5:2...   259   7e-70
AT4G27880.1 | Symbols:  | Protein with RING/U-box and TRAF-like ...   257   3e-69
AT3G13672.2 | Symbols:  | TRAF-like superfamily protein | chr3:4...   198   1e-51
AT3G13672.1 | Symbols:  | TRAF-like superfamily protein | chr3:4...   198   2e-51

>AT3G58040.1 | Symbols: SINAT2 | seven in absentia of Arabidopsis 2
           | chr3:21489612-21491085 FORWARD LENGTH=308
          Length = 308

 Score =  301 bits (770), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 137/168 (81%), Positives = 153/168 (91%)

Query: 2   LKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEV 61
           LKHEQ+CRFRPY CPYAGSECSV GDIPTL+VHLK DHKVD+HDGCTFNHRYVKSNPHEV
Sbjct: 135 LKHEQHCRFRPYTCPYAGSECSVTGDIPTLVVHLKDDHKVDMHDGCTFNHRYVKSNPHEV 194

Query: 62  ENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRK 121
           ENA WMLTVFNCF R FCLHFEAF LG APVY+AFLRF+G++NEA KF ++LEVGA+ RK
Sbjct: 195 ENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHGRK 254

Query: 122 LIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITG 169
           L WQGIPRSIR+SHRKVRD QDGLIIPR+LALYFS GD+Q+LK ++TG
Sbjct: 255 LTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGGDRQELKLRVTG 302


>AT2G41980.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr2:17523494-17524692 REVERSE LENGTH=305
          Length = 305

 Score =  295 bits (755), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 135/168 (80%), Positives = 151/168 (89%)

Query: 2   LKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEV 61
           LKHEQ+CRFR Y CPYAGSECSV GDIPTL+ HLK DHKVD+HDGCTFNHRYVKSNPHEV
Sbjct: 132 LKHEQHCRFRSYSCPYAGSECSVTGDIPTLVDHLKDDHKVDMHDGCTFNHRYVKSNPHEV 191

Query: 62  ENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRK 121
           ENA WMLTVFNCF R FCLHFEAF LG APVY+AFLRF+G++NEA KF ++LEVGA+SRK
Sbjct: 192 ENATWMLTVFNCFGRQFCLHFEAFQLGMAPVYMAFLRFMGDENEAKKFSYSLEVGAHSRK 251

Query: 122 LIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITG 169
           L WQGIPRSIR+SHRKVRD QDGLIIPR+LALYFS  DK++LK ++TG
Sbjct: 252 LTWQGIPRSIRDSHRKVRDSQDGLIIPRNLALYFSGSDKEELKLRVTG 299


>AT3G61790.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr3:22871974-22873543 REVERSE LENGTH=326
          Length = 326

 Score =  265 bits (678), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 141/168 (83%)

Query: 2   LKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEV 61
           LKHE  C FRPY CPYAGSECSV GDIP L+ HL+ DHKVD+H GCTFNHRYVKSNP EV
Sbjct: 138 LKHETVCNFRPYSCPYAGSECSVTGDIPFLVAHLRDDHKVDMHSGCTFNHRYVKSNPREV 197

Query: 62  ENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRK 121
           ENA WMLTVF+CF +YFCLHFEAF LG APVY+AFLRF+G++ EA  + ++LEVG   RK
Sbjct: 198 ENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLEVGGYGRK 257

Query: 122 LIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITG 169
           LIW+G PRS+R+SHRKVRD  DGLII R++AL+FS GD+++LK ++TG
Sbjct: 258 LIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTG 305


>AT5G53360.1 | Symbols:  | TRAF-like superfamily protein |
           chr5:21648485-21649269 FORWARD LENGTH=233
          Length = 233

 Score =  259 bits (661), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 139/168 (82%)

Query: 2   LKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEV 61
           LKHE  C FRPY CPYAGSEC+ +GDI  L+ HL+ DHKVD+H GCTFNHRYVKSNP EV
Sbjct: 45  LKHESQCNFRPYSCPYAGSECAAVGDITFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREV 104

Query: 62  ENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRK 121
           ENA WMLTVF CF +YFCLHFEAF LG APVY+AFLRF+G++++A  + ++LEVG + RK
Sbjct: 105 ENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLEVGGSGRK 164

Query: 122 LIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITG 169
             W+G PRS+R+SHRKVRD  DGLII R++AL+FS GDK++LK ++TG
Sbjct: 165 QTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTG 212


>AT4G27880.1 | Symbols:  | Protein with RING/U-box and TRAF-like
           domains | chr4:13883623-13884927 FORWARD LENGTH=327
          Length = 327

 Score =  257 bits (657), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 113/168 (67%), Positives = 139/168 (82%)

Query: 2   LKHEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEV 61
           LKHE  C FRPY CPYAGSEC ++GDIP L+ HL+ DHKVD+H G TFNHRYVKSNP EV
Sbjct: 139 LKHESLCNFRPYSCPYAGSECGIVGDIPFLVAHLRDDHKVDMHAGSTFNHRYVKSNPREV 198

Query: 62  ENAIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRK 121
           ENA WMLTVF+CF +YFCLHFEAF LG  PVY+AFLRF+G++ +A  + ++LEVG + RK
Sbjct: 199 ENATWMLTVFHCFGQYFCLHFEAFQLGMGPVYMAFLRFMGDEEDARSYSYSLEVGGSGRK 258

Query: 122 LIWQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDKQQLKFKITG 169
           L W+G PRSIR+SHRKVRD  DGLII R++AL+FS GD+++LK ++TG
Sbjct: 259 LTWEGTPRSIRDSHRKVRDSNDGLIIQRNMALFFSGGDRKELKLRVTG 306


>AT3G13672.2 | Symbols:  | TRAF-like superfamily protein |
           chr3:4473541-4474343 REVERSE LENGTH=220
          Length = 220

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 127/169 (75%), Gaps = 3/169 (1%)

Query: 4   HEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEVEN 63
           H +N + +PY CP++G++C V GDI  LL+HL+ DH V++ DG +F+HRYV  +P  + +
Sbjct: 42  HIENPKKKPYNCPHSGAKCDVTGDIQRLLLHLRNDHNVEMSDGRSFSHRYVHHDPKHLHH 101

Query: 64  AIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRKLI 123
           A WMLT+ +C  R FCL+FEAF L K P+Y+AF++F+G++ EA  F ++L+VG N RKL 
Sbjct: 102 ATWMLTLLDCCGRKFCLYFEAFHLRKTPMYMAFMQFMGDEEEAMSFSYSLQVGGNGRKLT 161

Query: 124 WQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDK---QQLKFKITG 169
           WQG+PRSIR+SH+ VRD QDGLII R LAL+FS+ +    ++LK K++G
Sbjct: 162 WQGVPRSIRDSHKTVRDSQDGLIITRKLALFFSTDNNTTDKELKLKVSG 210


>AT3G13672.1 | Symbols:  | TRAF-like superfamily protein |
           chr3:4473541-4474343 REVERSE LENGTH=216
          Length = 216

 Score =  198 bits (503), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 88/169 (52%), Positives = 127/169 (75%), Gaps = 3/169 (1%)

Query: 4   HEQNCRFRPYKCPYAGSECSVMGDIPTLLVHLKIDHKVDVHDGCTFNHRYVKSNPHEVEN 63
           H +N + +PY CP++G++C V GDI  LL+HL+ DH V++ DG +F+HRYV  +P  + +
Sbjct: 38  HIENPKKKPYNCPHSGAKCDVTGDIQRLLLHLRNDHNVEMSDGRSFSHRYVHHDPKHLHH 97

Query: 64  AIWMLTVFNCFERYFCLHFEAFLLGKAPVYIAFLRFLGEDNEASKFRFTLEVGANSRKLI 123
           A WMLT+ +C  R FCL+FEAF L K P+Y+AF++F+G++ EA  F ++L+VG N RKL 
Sbjct: 98  ATWMLTLLDCCGRKFCLYFEAFHLRKTPMYMAFMQFMGDEEEAMSFSYSLQVGGNGRKLT 157

Query: 124 WQGIPRSIRNSHRKVRDCQDGLIIPRHLALYFSSGDK---QQLKFKITG 169
           WQG+PRSIR+SH+ VRD QDGLII R LAL+FS+ +    ++LK K++G
Sbjct: 158 WQGVPRSIRDSHKTVRDSQDGLIITRKLALFFSTDNNTTDKELKLKVSG 206