Miyakogusa Predicted Gene

Lj0g3v0324149.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324149.1 tr|B7FHC6|B7FHC6_MEDTR Iron sulfur cluster
assembly protein OS=Medicago truncatula GN=MTR_3g077720
P,78.79,6e-36,IRON-SULFUR CLUSTER ASSEMBLY ENZYME ISCU,
MITOCHONDRIAL,NULL; IRON-SULFUR CLUSTER ASSEMBLY ENZYME
(N,CUFF.22029.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22220.1 | Symbols: ISU1, ATISU1 | SufE/NifU family protein |...   144   9e-36
AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 | chr4:1963386...   139   5e-34
AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5139-58...   113   2e-26

>AT4G22220.1 | Symbols: ISU1, ATISU1 | SufE/NifU family protein |
           chr4:11759444-11760881 REVERSE LENGTH=167
          Length = 167

 Score =  144 bits (364), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 82/95 (86%), Gaps = 1/95 (1%)

Query: 1   MKLQIRVDE-TGKVIDACYKTFGCVSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSL 59
           MKLQI+VDE TG+++DA +KTFGC SAIASSSVATEWV GK ME+VLTIKNTEIAKHLSL
Sbjct: 67  MKLQIKVDEKTGQIVDARFKTFGCGSAIASSSVATEWVKGKAMEDVLTIKNTEIAKHLSL 126

Query: 60  PPVKLHCSMLAEDAMKAAVKDLVSKRGPASGEKAA 94
           PPVKLHCSMLAEDA+KAAVKD   KR   +G  AA
Sbjct: 127 PPVKLHCSMLAEDAIKAAVKDYKEKRVKTNGAAAA 161


>AT4G04080.1 | Symbols: ISU3, ATISU3 | ISCU-like 3 |
           chr4:1963386-1964308 FORWARD LENGTH=171
          Length = 171

 Score =  139 bits (349), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 66/95 (69%), Positives = 81/95 (85%)

Query: 1   MKLQIRVDETGKVIDACYKTFGCVSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSLP 60
           MKLQ++ D +G++IDA +KTFGC SAIA+SSVATEWV GK +EEVLTIKN++IAKHLSLP
Sbjct: 66  MKLQVKFDGSGQIIDAKFKTFGCGSAIAASSVATEWVKGKSVEEVLTIKNSQIAKHLSLP 125

Query: 61  PVKLHCSMLAEDAMKAAVKDLVSKRGPASGEKAAT 95
           PVKLHCSMLAEDA+KAA+K+   K+  A+GE   T
Sbjct: 126 PVKLHCSMLAEDAIKAAIKNYKEKQDKANGETVET 160


>AT3G01020.1 | Symbols: ISU2, ATISU2 | ISCU-like 2 | chr3:5139-5893
           FORWARD LENGTH=163
          Length = 163

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 74/85 (87%)

Query: 1   MKLQIRVDETGKVIDACYKTFGCVSAIASSSVATEWVIGKEMEEVLTIKNTEIAKHLSLP 60
           M LQI+VD++G++ID  +KTFGC SAIASSSVA+EW+ GK ++EV+TIKN EIAKHL LP
Sbjct: 65  MSLQIKVDDSGQIIDTRFKTFGCGSAIASSSVASEWIKGKTLDEVMTIKNAEIAKHLRLP 124

Query: 61  PVKLHCSMLAEDAMKAAVKDLVSKR 85
           PVKLHCSMLAEDA+K+AV+D   K+
Sbjct: 125 PVKLHCSMLAEDAIKSAVRDYKEKQ 149