Miyakogusa Predicted Gene

Lj0g3v0324049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324049.1 tr|Q9LQV4|Q9LQV4_ARATH F10B6.17 OS=Arabidopsis
thaliana GN=At1g14770/F10B6_2 PE=2
SV=1,30.77,0.00000000000005,seg,NULL,CUFF.22013.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G68030.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    74   7e-14
AT1G14770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    73   1e-13
AT1G14770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    73   1e-13

>AT1G68030.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:25500378-25501544 REVERSE LENGTH=314
          Length = 314

 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 67/124 (54%), Gaps = 4/124 (3%)

Query: 18  VIEALAGFKGISISALQGLIDLAPVGPDDLGESTRELVALRCLEELSAASVQGVNHLDAS 77
           +IE  A FK   +  L  + +LAP  PD LGE T E+VA RCL  L  + V  V     +
Sbjct: 26  IIEYFAKFK-TELWMLNDVFELAPKLPDYLGEYTNEMVAFRCLASLFDSHVVSVTTTTTT 84

Query: 78  STLDFRAGFDFSRSCEEVLREIFHEIQLSDLEMAGEMVLKSNIPPFIMHKRASTVKCQLE 137
           +++     FD S SCE VL+ I  EI LS+L+     + K N+ PFI HK  S  KC LE
Sbjct: 85  TSM---IEFDSSESCEYVLQCILDEIPLSELKPGAPGLTKWNLQPFIKHKLLSLPKCALE 141

Query: 138 QLKE 141
            + E
Sbjct: 142 LMIE 145


>AT1G14770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:5086867-5088437 REVERSE LENGTH=429
          Length = 429

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)

Query: 19  IEALAGFKGISISALQGLIDLAPVG---PDDLGESTRELVALRCLEELSAASVQGVNHLD 75
           IE +A F    +  L  L+DL  +G    DD G+   E+++LR LE +   S+   N + 
Sbjct: 32  IEYVAKF----VKDLSCLLDLMNIGYQYSDDYGKRINEVLSLRVLEFMFDPSMSDANGVG 87

Query: 76  ASSTLDFRAGFDFSRSCEEVLREIFHEIQLSDLEMAGEMVLKSNIPPFIMHKRASTVKCQ 135
            +S L+ +  FD S S  +VLR I  EI +++L +    + K N+ PFI HK     +C 
Sbjct: 88  VASALEEKVEFDLSLSNADVLRGILKEIPVAELRVGMPELSKFNVLPFIAHKNLCLPQCA 147

Query: 136 LEQLKE-SILEGTLPLTDYLKERSGLFQSNRGYTVH 170
           LE+L++ S++E     T +++    +F+ +R  +VH
Sbjct: 148 LEKLRDVSLMENQTSATPFMETNDPVFRDDR--SVH 181


>AT1G14770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:5086867-5088437 REVERSE LENGTH=429
          Length = 429

 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 10/156 (6%)

Query: 19  IEALAGFKGISISALQGLIDLAPVG---PDDLGESTRELVALRCLEELSAASVQGVNHLD 75
           IE +A F    +  L  L+DL  +G    DD G+   E+++LR LE +   S+   N + 
Sbjct: 32  IEYVAKF----VKDLSCLLDLMNIGYQYSDDYGKRINEVLSLRVLEFMFDPSMSDANGVG 87

Query: 76  ASSTLDFRAGFDFSRSCEEVLREIFHEIQLSDLEMAGEMVLKSNIPPFIMHKRASTVKCQ 135
            +S L+ +  FD S S  +VLR I  EI +++L +    + K N+ PFI HK     +C 
Sbjct: 88  VASALEEKVEFDLSLSNADVLRGILKEIPVAELRVGMPELSKFNVLPFIAHKNLCLPQCA 147

Query: 136 LEQLKE-SILEGTLPLTDYLKERSGLFQSNRGYTVH 170
           LE+L++ S++E     T +++    +F+ +R  +VH
Sbjct: 148 LEKLRDVSLMENQTSATPFMETNDPVFRDDR--SVH 181