Miyakogusa Predicted Gene

Lj0g3v0324039.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0324039.2 Non Chatacterized Hit- tr|C5XSM8|C5XSM8_SORBI
Putative uncharacterized protein Sb04g020760 OS=Sorghu,27.01,4e-16,no
description,Zinc finger, RING/FYVE/PHD-type; no
description,Homeodomain-like; Myb_DNA-bind_6,NULL,CUFF.22011.2
         (658 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G03780.1 | Symbols: TRFL10 | TRF-like 10 | chr5:999266-100094...    68   2e-11
AT1G14770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    67   4e-11
AT1G14770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    67   4e-11
AT4G12670.1 | Symbols:  | Homeodomain-like superfamily protein |...    65   2e-10
AT1G01150.1 | Symbols:  | Homeodomain-like protein with RING/FYV...    59   8e-09
AT1G68030.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    54   2e-07

>AT5G03780.1 | Symbols: TRFL10 | TRF-like 10 | chr5:999266-1000947
           REVERSE LENGTH=420
          Length = 420

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 46/68 (67%), Gaps = 4/68 (5%)

Query: 590 RRKKIPWTAEEEELIQEGVQKFGCN-DQNIPWKKIWAFGSHVFEQDGKRRMPQDLKDKWK 648
           +R+++ WT EEEE+++ GV+KF    ++N+PW+KI   G  VF +    R P DLKDKW+
Sbjct: 344 QRRRLLWTYEEEEMLKVGVEKFAAEANKNMPWRKILEMGEKVFHE---TRTPADLKDKWR 400

Query: 649 NMCKAHSK 656
           +M K  +K
Sbjct: 401 SMVKIMNK 408


>AT1G14770.2 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:5086867-5088437 REVERSE LENGTH=429
          Length = 429

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 295 LPAMTESTEQNLCMKCNEGGKLMVCKTTTCQLMMHKNCLGASCQLDANGNVFCPFCAYSH 354
           LP+ + +  +N+C KC + G L++C  + C   +HK CL     +D  GN  CP C Y  
Sbjct: 336 LPSSSRTRPENVCWKCEKEGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDR 395

Query: 355 TISEYLEAKKKASLARKELA 374
              EY E++K  S A++ L 
Sbjct: 396 LAMEYHESQKLISCAKRRLV 415


>AT1G14770.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:5086867-5088437 REVERSE LENGTH=429
          Length = 429

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 295 LPAMTESTEQNLCMKCNEGGKLMVCKTTTCQLMMHKNCLGASCQLDANGNVFCPFCAYSH 354
           LP+ + +  +N+C KC + G L++C  + C   +HK CL     +D  GN  CP C Y  
Sbjct: 336 LPSSSRTRPENVCWKCEKEGTLLICSRSECAAKVHKECLNCPVNVDEYGNFLCPLCWYDR 395

Query: 355 TISEYLEAKKKASLARKELA 374
              EY E++K  S A++ L 
Sbjct: 396 LAMEYHESQKLISCAKRRLV 415


>AT4G12670.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:7472530-7474519 FORWARD LENGTH=499
          Length = 499

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 4/68 (5%)

Query: 585 ATPQSRRKKIPWTAEEEELIQEGVQKFGCNDQNIPWKKIWAFGSHVFEQDGKRRMPQDLK 644
           A   ++RK+  WT  E E+++ GVQKF   ++NIPW+KI  FG  VF  +   R P DLK
Sbjct: 409 AQSATKRKRRFWTLAEVEMLRVGVQKF-PGERNIPWRKILQFGRDVFHDE---RAPSDLK 464

Query: 645 DKWKNMCK 652
           DKWK + K
Sbjct: 465 DKWKTLNK 472


>AT1G01150.1 | Symbols:  | Homeodomain-like protein with
           RING/FYVE/PHD-type zinc finger domain | chr1:70115-71998
           REVERSE LENGTH=345
          Length = 345

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 10/98 (10%)

Query: 560 ECEKHSISRDS------TSFHKQEVQFSKSQATPQSRRKKIPWTAEEEELIQEGVQKFG- 612
           E  KH  +R+S        F   E    ++ A    + K++ WT  EE++++EGV+KF  
Sbjct: 195 ELVKHLKARNSQLDESTDQFIDMEKSCGEAYAVVNDQPKRVLWTVNEEKMLREGVEKFSD 254

Query: 613 CNDQNIPWKKIWAFGSHVFEQDGKRRMPQDLKDKWKNM 650
             ++N+PWKKI   G  +F      R   DLKDKW+NM
Sbjct: 255 TINKNMPWKKILEMGKGIFH---TTRNSSDLKDKWRNM 289


>AT1G68030.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr1:25500378-25501544 REVERSE LENGTH=314
          Length = 314

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 42/71 (59%)

Query: 307 CMKCNEGGKLMVCKTTTCQLMMHKNCLGASCQLDANGNVFCPFCAYSHTISEYLEAKKKA 366
           C+ C E GKL+ C +  C++M+H+ CL +       G+ +C  CA +   +EY++ + + 
Sbjct: 229 CVNCKESGKLLFCSSDGCEVMVHQKCLDSPPSYHDAGDFYCSLCALTCPSAEYVQFQDEV 288

Query: 367 SLARKELAFFI 377
           + A+++L  F+
Sbjct: 289 AKAKRKLVSFL 299