Miyakogusa Predicted Gene

Lj0g3v0323599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0323599.1 tr|G7JGG5|G7JGG5_MEDTR Ferredoxin-6 OS=Medicago
truncatula GN=MTR_4g098490 PE=2 SV=1,79.79,0,2Fe-2S
ferredoxin-like,2Fe-2S ferredoxin-type domain; Fer2,2Fe-2S
ferredoxin-type domain; fdx_plant:,CUFF.21981.1
         (184 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32550.1 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily...   221   2e-58
AT1G32550.2 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily...   202   1e-52
AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 | chr2:11758281...    70   1e-12
AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 | chr1:3664445-...    62   2e-10
AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like sup...    60   8e-10
AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily...    57   6e-09
AT5G10000.1 | Symbols: ATFD4, FD4 | ferredoxin 4 | chr5:3126709-...    52   2e-07

>AT1G32550.1 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily
           protein | chr1:11771969-11774117 REVERSE LENGTH=181
          Length = 181

 Score =  221 bits (563), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 100/126 (79%), Positives = 111/126 (88%)

Query: 59  VPTHKVTVHDRQRGVVHEFSVPEDQYILHTAESQNINLPFACRHGCCTSCAVRIKNGQIK 118
           VP+HKVTVHDRQRGVVHEF VPEDQYILH+AESQNI+LPFACRHGCCTSCAVR+K+G+++
Sbjct: 56  VPSHKVTVHDRQRGVVHEFEVPEDQYILHSAESQNISLPFACRHGCCTSCAVRVKSGELR 115

Query: 119 QPQALGISAELREKGYALLCVSFPTSXXXXXXXXXXXXYWLQFGRYFARGPVERDDYALE 178
           QPQALGISAEL+ +GYALLCV FPTS            YWLQFGRYFARGP+ERDDYALE
Sbjct: 116 QPQALGISAELKSQGYALLCVGFPTSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALE 175

Query: 179 LAMGDE 184
           LAMGDE
Sbjct: 176 LAMGDE 181


>AT1G32550.2 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily
           protein | chr1:11771969-11774117 REVERSE LENGTH=194
          Length = 194

 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/167 (61%), Positives = 118/167 (70%), Gaps = 21/167 (12%)

Query: 34  VAAAAELQAPMGLAGGTDYEFPGGNVPTHKVTVHDRQRGVVHEFSVPEDQYILHTAESQN 93
             A  E + P+ ++  +D       VP+HKVTVHDRQRGVVHEF   EDQYILH+AESQN
Sbjct: 33  TTATCEFRIPVEVSTPSDR--GSLVVPSHKVTVHDRQRGVVHEF---EDQYILHSAESQN 87

Query: 94  INLPFACRHGCCTSCAVRIKNGQIKQPQALGISAELREK----------------GYALL 137
           I+LPFACRHGCCTSCAVR+K+G+++QPQALGISAEL+ +                GYALL
Sbjct: 88  ISLPFACRHGCCTSCAVRVKSGELRQPQALGISAELKSQRISSLDLIQCQKTYLTGYALL 147

Query: 138 CVSFPTSXXXXXXXXXXXXYWLQFGRYFARGPVERDDYALELAMGDE 184
           CV FPTS            YWLQFGRYFARGP+ERDDYALELAMGDE
Sbjct: 148 CVGFPTSDLEVETQDEDEVYWLQFGRYFARGPIERDDYALELAMGDE 194


>AT2G27510.1 | Symbols: ATFD3, FD3 | ferredoxin 3 |
           chr2:11758281-11758748 REVERSE LENGTH=155
          Length = 155

 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query: 72  GVVHEFSVPEDQYILHTAESQNINLPFACRHGCCTSCAVRIKNGQIKQPQALGISAELRE 131
           G   EF V +DQYIL  AE   ++LP++CR G C++CA +I +G + Q     +     E
Sbjct: 70  GQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLE 129

Query: 132 KGYALLCVSFPTS 144
           KGY L CV++P S
Sbjct: 130 KGYVLTCVAYPQS 142


>AT1G10960.1 | Symbols: ATFD1, FD1 | ferredoxin 1 |
           chr1:3664445-3664891 FORWARD LENGTH=148
          Length = 148

 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query: 82  DQYILHTAESQNINLPFACRHGCCTSCAVRIKNGQIKQPQALGISAELREKGYALLCVSF 141
           D Y+L  AE   ++LP++CR G C+SCA ++ +G I Q     +  E   +GY L CV++
Sbjct: 73  DVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAY 132

Query: 142 PTS 144
           PTS
Sbjct: 133 PTS 135


>AT1G60950.1 | Symbols: FED A, ATFD2 | 2Fe-2S ferredoxin-like
           superfamily protein | chr1:22444565-22445011 FORWARD
           LENGTH=148
          Length = 148

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 8/111 (7%)

Query: 37  AAELQAPMGLAGGTDYEFPGGNV---PTHKVTVHDRQRGVVHEFSVPEDQYILHTAESQN 93
           +A  Q+  GL  GT     GG V    T+KV     +  +  E    +D Y+L  AE   
Sbjct: 30  SANTQSLFGLKSGT---ARGGRVTAMATYKVKFITPEGEL--EVECDDDVYVLDAAEEAG 84

Query: 94  INLPFACRHGCCTSCAVRIKNGQIKQPQALGISAELREKGYALLCVSFPTS 144
           I+LP++CR G C+SCA ++ +G + Q     +  E   +G+ L C ++PTS
Sbjct: 85  IDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTS 135


>AT4G14890.1 | Symbols: FdC2 | 2Fe-2S ferredoxin-like superfamily
           protein | chr4:8520887-8521351 FORWARD LENGTH=154
          Length = 154

 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 62  HKVTV-HDRQRGVVHEFSVPEDQYILHTAESQNINLPFACRHGCCTSCAVRIKNGQIKQP 120
           +KV V HD   G   E  V  D+ IL  A    +++P+ C  G C +C  ++  G + Q 
Sbjct: 53  YKVVVEHD---GKTTELEVEPDETILSKALDSGLDVPYDCNLGVCMTCPAKLVTGTVDQS 109

Query: 121 QALGISAELREKGYALLCVSFPTS 144
             + +S ++ E+GY LLC S+PTS
Sbjct: 110 GGM-LSDDVVERGYTLLCASYPTS 132


>AT5G10000.1 | Symbols: ATFD4, FD4 | ferredoxin 4 |
           chr5:3126709-3127155 FORWARD LENGTH=148
          Length = 148

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 71  RGVVHEFSVPEDQYILHTAESQNINLPFACRHGCCTSCAVRIKNGQIKQPQALGISAELR 130
            G   E    ED  IL +AE+  + LP++CR G C +C  ++ +G++ Q     +  E  
Sbjct: 62  EGEEQEIEGNEDCCILESAENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQI 121

Query: 131 EKGYALLCVSFP 142
           +KGY L C++ P
Sbjct: 122 QKGYILTCIALP 133