Miyakogusa Predicted Gene

Lj0g3v0323479.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0323479.1 Non Chatacterized Hit- tr|I1L0E1|I1L0E1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.36294 PE,87.35,0,DNA/RNA
polymerases,NULL; seg,NULL; RVT_1,Reverse transcriptase;
Intron_maturas2,Domain X; PREDICTED,CUFF.21963.1
         (656 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46920.1 | Symbols:  | Intron maturase, type II family protei...  1083   0.0  
AT1G30010.1 | Symbols:  | Intron maturase, type II family protei...   709   0.0  

>AT5G46920.1 | Symbols:  | Intron maturase, type II family protein |
           chr5:19053668-19055875 FORWARD LENGTH=735
          Length = 735

 Score = 1083 bits (2802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/653 (78%), Positives = 577/653 (88%), Gaps = 11/653 (1%)

Query: 1   MWIDNFRHPDRVVTNLSSSLRRFELWLLAYQKVLTDETGAYTPRSTIPRSQLEDLLALRN 60
           MW++NF+ PD+  TNL+S LRRFELW+LAYQKV  DE GAY PRS+I RS LE+LLALRN
Sbjct: 81  MWLENFKEPDKTATNLTSYLRRFELWVLAYQKVCCDELGAYVPRSSIQRSALENLLALRN 140

Query: 61  AVLDGNFKWGARLKFHIKSPKDKTDYDSLSKRKIKIILTTTQPAPFQDKIVQEVLLMILE 120
           +VLD  FKWG+RL F+IKSP+DKTDY+SLSKRKIK ILTTTQP PFQD+IVQEVLLMILE
Sbjct: 141 SVLDDRFKWGSRLDFYIKSPRDKTDYESLSKRKIKAILTTTQPTPFQDRIVQEVLLMILE 200

Query: 121 PIYEARFSSKSFAFRPGRTPHPVLRVIRRSFAGYLWYIKGDLSTVLDGMKVGLVINAVMR 180
           PIYE+RFS KSFAFRPGRT H VLRVIRR+FAGYLWY+KGDLS VLDGMKVG VI+++MR
Sbjct: 201 PIYESRFSQKSFAFRPGRTAHTVLRVIRRNFAGYLWYVKGDLSVVLDGMKVGFVISSLMR 260

Query: 181 DVRDKMIIDLLKSALVTPVVTTKVDDREPXXXXXXXXXXXRVLAEDEPKPDPYWLDTFFG 240
           DVRDK +IDL+KSALVTPVVT+KV+D E            RVLAEDEPKPDPYWL+TFFG
Sbjct: 261 DVRDKKVIDLIKSALVTPVVTSKVEDGEKKKTKKRKYQKKRVLAEDEPKPDPYWLETFFG 320

Query: 241 FAPEEAEKVPKWGHCGVLSPLLANVCLDELDRWMEGKIKEFYVPSKSDVIWNSPEGQAEQ 300
           FAPEEA K P+WGHCG+LSPLL NVCLDELDRWME K+K+FY PSKSDVIWN+PEG+A+Q
Sbjct: 321 FAPEEAGKSPQWGHCGILSPLLVNVCLDELDRWMETKVKDFYRPSKSDVIWNNPEGEADQ 380

Query: 301 GNTSWPEFVPTSGPDKTRKIDYIRYGGHILIGVRGPRADAATLRKQLIEFCDEKLMLKLD 360
           GNTSWPEFVPTSGPDKTRK+DY+RYGGHILIGVRGPRADAATLRK+LIEF D+K ML+LD
Sbjct: 381 GNTSWPEFVPTSGPDKTRKMDYVRYGGHILIGVRGPRADAATLRKELIEFVDQKYMLRLD 440

Query: 361 NESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIRQ 420
           NE+LPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCI+Q
Sbjct: 441 NENLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIISEKGVGTLLSVTASLKQCIKQ 500

Query: 421 FRKLMFLKGDRDPDPQPCFRMFHATQAHTNAQMNKFLATVVEWYRYADNRKKIVNFCSYI 480
           FRKL+F+KGDRDPDPQPCFRMFHATQAHTN QMNKFL T+ EWYR+ADNRKKIVNFCSYI
Sbjct: 501 FRKLLFIKGDRDPDPQPCFRMFHATQAHTNNQMNKFLTTIAEWYRFADNRKKIVNFCSYI 560

Query: 481 IRGSLAKLYAAKYKLRSRAKVYKIGARNLSRPLKEKKGQSPEYHNLLRMGLAESIDGLQF 540
           IRGSLAKLYAAKYKLRSRAKVYK   RNLS PL +KKGQSPEY NLLRMGLAES+DGL +
Sbjct: 561 IRGSLAKLYAAKYKLRSRAKVYKFANRNLSLPLLQKKGQSPEYQNLLRMGLAESVDGLVY 620

Query: 541 TRMSLVPETDYSPFPSNWRPDHEKSLLEYIKLEDPKTMEEQQNCIREQGLVTPQDYISML 600
           TRMSLVPETDYSPFP NWRP+HEK L+EY+ L++PKT+EEQ+  IRE+GLV+PQDY SML
Sbjct: 621 TRMSLVPETDYSPFPGNWRPEHEKFLIEYLTLDEPKTLEEQKRFIREKGLVSPQDYTSML 680

Query: 601 VWNYKRNSLPTDHLSSLKSNESVVGHQPLLVAS----NQDDNDTKSKEEENDA 649
           VWNYKRN++P D +S LK        QP L+ S    N+D++D K+KEE+ D+
Sbjct: 681 VWNYKRNAIPMDQVSILKD-------QPFLLGSSSTYNRDNDDQKNKEEDEDS 726


>AT1G30010.1 | Symbols:  | Intron maturase, type II family protein |
           chr1:10513194-10515329 FORWARD LENGTH=711
          Length = 711

 Score =  709 bits (1831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/626 (53%), Positives = 455/626 (72%), Gaps = 25/626 (3%)

Query: 1   MWIDNFRHP-DRVVTNLSSSLRRFELWLLAYQKVLTDETGAYTPRSTIPRSQLEDLLALR 59
           +W+ +F  P     +NL+  L +F+LW+LAYQ+     TG + PR+ I  + L  LL+L+
Sbjct: 64  LWVKSFSSPPSATFSNLTGFLSKFDLWVLAYQRTCAHVTGTFPPRNAIHANALRSLLSLQ 123

Query: 60  NAVL--DGNFKWGARLKFHIKSPKDKTDYDS---LSKRKIKIILTTTQPAPFQDKIVQEV 114
           NAV    G F+W  ++  +++SPKDK   +    +SK K++ I+ + +P  FQD++V EV
Sbjct: 124 NAVTRSGGKFRWNDKMNQYVRSPKDKISMNGGEGMSKGKVRRIIESEEPI-FQDRVVHEV 182

Query: 115 LLMILEPIYEARFSSKSFAFRPGRTPHPVLRVIRRSFAGYLWYIKGDLSTVLDGMKVGLV 174
           LLMILEP +EARFSSKS  FRPGR PH V+R IR +FAGYLW++KGD+S +LD + V +V
Sbjct: 183 LLMILEPFFEARFSSKSHGFRPGRNPHTVIRTIRSNFAGYLWFMKGDVSEMLDHVDVDVV 242

Query: 175 INAVMRDVRDKMIIDLLKSAL-------VTPVVTTKVDD-----REPXXXXXXXXXXXRV 222
           +N + + V+D+ ++ L++S+L       +  VV    +D     +             ++
Sbjct: 243 MNCLQKVVKDRKVLGLIESSLKFSDKRVLKRVVEKHGNDNGLGTKRRIEREKRNKTKKKI 302

Query: 223 LAEDEPKPDPYWLDTFFGFAPEEAEKVPKWGHCGVLSPLLANVCLDELDRWMEGKIKEFY 282
           L++DEPKPDPYWL TF+ FAP+EA KVP +G+CGVLSPLLANVCL+ELDR+ME KI E++
Sbjct: 303 LSDDEPKPDPYWLRTFYSFAPKEAAKVPSYGYCGVLSPLLANVCLNELDRFMETKIVEYF 362

Query: 283 VPSKSDVIWNSPEGQAEQG--NTSWPEFVPTSGPDKTRKIDYIRYGGHILIGVRGPRADA 340
            P K D IW       E G  N +WPEFVP+SG +KTRK+DYIRYGGH LIG+RGPR DA
Sbjct: 363 SPCKDDSIWKE---SIEDGCHNPAWPEFVPSSGKEKTRKMDYIRYGGHFLIGIRGPREDA 419

Query: 341 ATLRKQLIEFCDEKLMLKLDNESLPIEHITKGIMFLDHVLCRRVVYPTLRYTATGGKIIS 400
             +RK++I+FCD    ++LDN  L IEHI++GI FLDH++CRRV+YPTLRYT +GG I+S
Sbjct: 420 VKMRKEIIDFCDRVFGVRLDNSKLEIEHISRGIQFLDHIICRRVIYPTLRYTGSGGSIVS 479

Query: 401 EKGVGTLLSVTASLKQCIRQFRKLMFLKGDRDPDPQPCFRMFHATQAHTNAQMNKFLATV 460
           +KGVGTLLSV+ASL+QCIRQFR+L F+KGD+DP+P PC  M +++Q+H+N+QMNKFL T+
Sbjct: 480 KKGVGTLLSVSASLEQCIRQFRRLAFVKGDKDPEPLPCNPMLYSSQSHSNSQMNKFLETM 539

Query: 461 VEWYRYADNRKKIVNFCSYIIRGSLAKLYAAKYKLRSRAKVYKIGARNLSRPLKEKKGQS 520
            +WY+YADNRKK V FC+Y+IR SLAKLYAA+Y+L+SRAKVY I +R+LS PL E    S
Sbjct: 540 ADWYKYADNRKKAVGFCAYVIRSSLAKLYAARYRLKSRAKVYSIASRDLSHPLSESSNNS 599

Query: 521 -PEYHNLLRMGLAESIDGLQFTRMSLVPETDYSPFPSNWRPDHEKSLLEYIKLEDPKTME 579
            PEY +LLRMGL ++I+G+QF+RMSL+P  DY+PFP NW P+HE+ L EYI+L+DPK   
Sbjct: 600 APEYSDLLRMGLVDAIEGVQFSRMSLIPSCDYTPFPRNWIPNHEQVLQEYIRLQDPKFFC 659

Query: 580 EQQNCIREQGLVTPQDYISMLVWNYK 605
                I+ +GL  PQD IS  VW++K
Sbjct: 660 GLHRSIKREGLTLPQDEISEAVWDFK 685