Miyakogusa Predicted Gene
- Lj0g3v0322239.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0322239.3 Non Chatacterized Hit- tr|B9RLT0|B9RLT0_RICCO ATP
binding protein, putative OS=Ricinus communis GN=R,58.92,0,DEAD-like
helicases superfamily,Helicase, superfamily 1/2, ATP-binding domain;
helicase superfamily ,CUFF.21862.3
(1163 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 1180 0.0
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 251 3e-66
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 84 6e-16
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 83 1e-15
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 79 3e-14
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 77 9e-14
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 76 2e-13
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 75 3e-13
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 75 4e-13
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 73 1e-12
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 71 4e-12
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 70 1e-11
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 69 3e-11
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 69 3e-11
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 68 3e-11
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 68 3e-11
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 68 3e-11
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 68 4e-11
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 68 4e-11
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 68 5e-11
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 67 9e-11
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 67 9e-11
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 67 9e-11
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 65 3e-10
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 64 8e-10
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 64 8e-10
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 63 1e-09
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 63 1e-09
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 63 2e-09
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 62 2e-09
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 62 2e-09
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 61 5e-09
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 61 6e-09
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 60 7e-09
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 58 3e-08
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 57 7e-08
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 57 8e-08
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 57 8e-08
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 55 3e-07
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1131 (53%), Positives = 766/1131 (67%), Gaps = 60/1131 (5%)
Query: 67 KFLASLEICAPDSFSVTXXXXXXXXXXXXXTCFQILNSILSQVVPSHFTQTSAGGQACVF 126
KF LEIC+PDSFSVT C + L ILS +P H+TQ GG+A V+
Sbjct: 74 KFRVRLEICSPDSFSVTPVQLQGFRCPEEQECLRQLRKILSDAIPLHYTQNDDGGKAGVY 133
Query: 127 KLVDYAAVLKRLKAAPEVQVEEIPWGTLNVVERLSHSFAAGRWMPVRPEHLSDEEVDCLI 186
K+ DY V LK + V+VE +PW TL VVE+LS S+ +G+W P PEH ++E+V+ LI
Sbjct: 134 KIRDYNKVSGCLKRSKSVEVEGVPWKTLAVVEKLSQSYISGKWQPCLPEHYTEEKVEQLI 193
Query: 187 EKLPGTIRRALLPFQMDGLRFALRRGGRCLIADDMGLGKTLQAIAIAGCFRDEGPILVVC 246
E LP + ALLPFQ+DGLRF LRRGGRC IAD+MGLGKTLQAIAIAGCF EG ILVVC
Sbjct: 194 ETLPRKLVNALLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAIAIAGCFISEGSILVVC 253
Query: 247 PAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPRVVVISYTMLHRLRKSMLE 306
PAVLR++WAEELERWLP LP+D+HLVFGHQDNP +L R P+VVVISY ML LR +MLE
Sbjct: 254 PAVLRFTWAEELERWLPSCLPSDVHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLE 313
Query: 307 REWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYDIYHQINM 366
REWALLIVDESHH+RC++K S+P EIK VLDVA KV+ IILLSGTPS+SRP+DI+HQINM
Sbjct: 314 REWALLIVDESHHLRCSKKKSDPPEIKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINM 373
Query: 367 LWPGLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEELNVLLKQTVMIRRLKEHV 426
LWPGLLGK+KYEFAKTYC++ ++G+QGK F ++SKG RL ELN+LL QTVMIRRLK+H+
Sbjct: 374 LWPGLLGKDKYEFAKTYCEVGLVRGIQGKIFQDFSKGTRLLELNILLNQTVMIRRLKQHL 433
Query: 427 MLQXXXXXXXXXXXXXXXSDLVAAKTAVGPLK-------IDASENANE------------ 467
+ Q SD+ A V K + +E ++E
Sbjct: 434 LTQLPPKRRQIVTILLKKSDIALAMAIVSEAKKQKDGAIAEVTEKSHEPDQNARGSNEAG 493
Query: 468 DMPLENFDEPD--------GKLSYQELGIAKLSGFCEWLSLHPL----------IEGSEN 509
+ EN D P+ GKLSYQ+LGIAKLS F EWLSLHPL I+G +
Sbjct: 494 HVNAENSDGPNSDKENQLCGKLSYQQLGIAKLSAFREWLSLHPLLSGLDYTPEEIDGDRS 553
Query: 510 ASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXX 569
++KM++FAHHHKVLDG+QEFIC+KGI FVRIDG TL RDRQ AV SF+ S EVK
Sbjct: 554 STKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGV 613
Query: 570 XXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWK 629
DFS AQ+VVFLELP+ P+++LQAEDRAHRRGQT+AVNVYIFCAKDT+DES+W+
Sbjct: 614 EAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQ 673
Query: 630 NLNKSLHRVSCTTDGKYDAMKEIEVEGISYLDPSLKTESLEKKSTFKDASSEIQVDKHPS 689
NLNK LHR+S TTDGKYD EIE+ G S P+ ++ E S+ + DK
Sbjct: 674 NLNKKLHRISSTTDGKYDGKTEIEIGGASIFKPAEESSEREVLEGQPSESNTVVADK--- 730
Query: 690 AVNSNESEASQDDKSDEPASFENNTIQGANIMDENVPCLDLGKDSVLDGNLDVDVSYTVE 749
V S + ++ D S+ +++ I+ E P ++ G S + + + ++ +
Sbjct: 731 IVESCDDPGTETDVSNT-IDLKDDMTSQLEIL-EVCPFVENGSGSGMRSSGTISLTMLAQ 788
Query: 750 RCSKKCLKDDKVIEDKKSISTTDADDNQPVLSVGADGHFSSQADSLRFEVSPYTGRVHLY 809
+++ K +I D + D+ P++ DSLRFEVS TGR+HLY
Sbjct: 789 E-NQENHKPKNLIADDGLVKEVDSSSIFPLI------------DSLRFEVSQNTGRIHLY 835
Query: 810 ACVLGTDTRPQPLYENFRPEELELISSAAVDEKQSVASLSVKDNTAYRHALLDFANEWKN 869
+C+ G D RP+P ++NFRPEE+E + + K+ S+ D+ + A+L+F EWK+
Sbjct: 836 SCIPGKDPRPRPHFQNFRPEEIEASNPSQGTTKEKNPE-SITDDPVHVLAILEFMKEWKS 894
Query: 870 LRSIERKKLHGKPLQLPLAVELCYLSESXXXXXXXXXXXXSRRRKTPLMEVSYPLPSGAI 929
LR IE++KL GKPLQLPL++EL YLSES S+RR TP E+S PLP A+
Sbjct: 895 LRPIEKRKLLGKPLQLPLSLELSYLSESTSHNSEGLLRGGSKRRNTPFSEISIPLPENAV 954
Query: 930 WKKINLRWGLGKKEKEYSQAWSLEDEPLCKLCQKQCMGDNAKTPEFFEDLFCNLACYEEY 989
W K+NLR G +KEKEY+QAWS+ +EPLCKLCQK C G NAK PE+ EDLFC LACYE+Y
Sbjct: 955 WIKVNLRSGHQRKEKEYTQAWSMSNEPLCKLCQKPCAGYNAKEPEYLEDLFCELACYEDY 1014
Query: 990 RMRTSNRFLRQELFQIEQGVCTNCLLDCHKLVVHIRPLSMKRRREYIEKVAPKIAKREKM 1049
R RTS+R++R QIE G+CTNC LDCH+LV +RPL +++RR YI K AP++ R+ +
Sbjct: 1015 RTRTSSRYIR----QIEHGICTNCKLDCHQLVKRLRPLPLEKRRTYINKAAPELFARKNL 1070
Query: 1050 LEKLVNDPTEGNAWHADHIIPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRSIRANA 1109
LE LVNDPTEGNAWHADHIIPVYQGGGEC+LENMRTLCVACH DVTAAQCAER+ IR+ A
Sbjct: 1071 LETLVNDPTEGNAWHADHIIPVYQGGGECRLENMRTLCVACHADVTAAQCAERKLIRSKA 1130
Query: 1110 RKQLKMLLNSMENGMQGAGGTNIKDHTPLEVHGSTPEDELLVIVPGSAYSL 1160
RKQLK LN + N + + ++ + + EDEL++ VPGSAYS+
Sbjct: 1131 RKQLKNTLNELRNNPKQKDLSADENTKETDSATNEEEDELMIEVPGSAYSI 1181
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 251 bits (640), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 156/486 (32%), Positives = 249/486 (51%), Gaps = 43/486 (8%)
Query: 185 LIEKLPGTIRRALLPFQMDGLRFALRRGGRCLIADDMGLGKTLQAIAIAGCFRDEGPILV 244
L EK+P I LLPFQ +G+ F L+ GGR L+AD+MGLGKTLQAIA+ C ++ P+L+
Sbjct: 160 LYEKIPSHIEPKLLPFQREGIEFILQHGGRVLLADEMGLGKTLQAIAVTTCVQESWPVLI 219
Query: 245 VCPAVLRYSWAEELERWLPLFLPADIHLVF---------------GHQDNPVHLKRCPRV 289
+ P+ LR WA + +WL + P+DI +V + +HL +
Sbjct: 220 IAPSSLRLHWATMIHQWLHV-PPSDIVVVLPQPGGSNKCGFTIVSSNTKGTIHLDGVFNI 278
Query: 290 VVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLS 349
V SY ++ +L K ++ ++ ++I DESH ++ Q + A L V K + ILLS
Sbjct: 279 V--SYDVVTKLDKLLMALDFKVVIADESHFLKNGQA----KRTSACLPVIKKAQYAILLS 332
Query: 350 GTPSLSRPYDIYHQINMLWPGLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEEL 409
GTP+LSRP +++ Q+ L+P + +N +E+ YC +G +F Y +EL
Sbjct: 333 GTPALSRPIELFKQLEALYPDVY-RNIHEYGGRYC--------KGGFFGTYQGASNHDEL 383
Query: 410 NVLLKQTVMIRRLKEHVMLQXXXXXXXXXXXXXXXSDLVAAKTAVGPLKIDASEN----A 465
+ L+K TVMIRRLK+ V+ + D+ LK+ S+ +
Sbjct: 384 HNLMKATVMIRRLKKDVLTELPSKRRQQVFLDLAAKDMKQINALFHELKVVKSKIKDCIS 443
Query: 466 NEDMPLENFDEPD--GKLSYQELGIAKLSGFCEWLSLHPLIEGSENASKMLIFAHHHKVL 523
+D+ F E + K+ Y + +AK+ ++L E K L+FAHH +L
Sbjct: 444 EDDIKSLKFIEKNLINKI-YTDSAVAKIPAVLDYLE-----NVIEAGCKFLVFAHHQSML 497
Query: 524 DGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXXXXXXXDFSIAQD 583
+ + +F+ +K + +RIDG+T A RQ+ V F+ E+K + A
Sbjct: 498 EELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVLSIRAAGVGITLTAAST 557
Query: 584 VVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLHRVSCTTD 643
V+F EL P ++QAEDRAHR GQ ++VN++ A DT+D+ W + L + D
Sbjct: 558 VIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDIIWDVVQSKLDNLGQMLD 617
Query: 644 GKYDAM 649
G+ +A+
Sbjct: 618 GQENAL 623
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 118/225 (52%), Gaps = 31/225 (13%)
Query: 179 DEEVDCLIEKLPGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGC 235
DE+ + LI GT+R +Q++GL F + ++AD+MGLGKT+Q++++ G
Sbjct: 614 DEQPEWLI---GGTLR----DYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGF 666
Query: 236 FRDE----GPILVVCPAVLRYSWAEELERWLP-----LFLPADIHLVFGHQDNPVHLKRC 286
++ GP LVV P +WA+E +WLP +++ Q + K+
Sbjct: 667 LQNTQQIPGPFLVVVPLSTLANWAKEFRKWLPGMNIIVYVGTRASREVCQQYEFYNEKKV 726
Query: 287 PR-----VVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASK 341
R ++ +Y ++ + + + + +W L+VDE+H + K SE + A+L+ ++K
Sbjct: 727 GRPIKFNALLTTYEVVLKDKAVLSKIKWIYLMVDEAHRL----KNSEAQLYTALLEFSTK 782
Query: 342 VRRIILLSGTPSLSRPYDIYHQINMLWPGLLGKNKYEFAKTYCDL 386
+ +L++GTP + +++ ++ L PG KNK EF + Y +L
Sbjct: 783 NK--LLITGTPLQNSVEELWALLHFLDPGKF-KNKDEFVENYKNL 824
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Query: 503 LIEGSENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRS-SPE 561
L+ E ++LIF+ ++LD + E++ +G F R+DG+T A RQ A+ F + + +
Sbjct: 948 LVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASD 1007
Query: 562 VKXXXXXXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKD 621
+ + A VV + P LQA RAHR GQ VN+Y F
Sbjct: 1008 DFCFLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSK 1067
Query: 622 TLDE 625
+++E
Sbjct: 1068 SVEE 1071
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 108/468 (23%), Positives = 193/468 (41%), Gaps = 54/468 (11%)
Query: 197 LLPFQMDGLRFAL---RRGGRCLIADDMGLGKTLQAIAIAGCFRD---EGPILVVCPAVL 250
L +Q+ G+++ + + G ++AD MGLGKT+Q I + +GP LV+ P
Sbjct: 202 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLST 261
Query: 251 RYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPR-------VVVISYTMLHRLRKS 303
+W E+ R+ P + A I+ +Q + + K P+ +V+ SY + K
Sbjct: 262 LSNWFNEIARFTP-SINAIIYHGDKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKR 320
Query: 304 MLER-EWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYDIYH 362
+L W +++DE H ++ K E+K + K+ +LL+GTP + +++
Sbjct: 321 ILRHYPWKYVVIDEGHRLK-NHKCKLLRELKHL-----KMDNKLLLTGTPLQNNLSELWS 374
Query: 363 QINMLWPGLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEELNVLLKQTVMIR-- 420
+N + P + + EF + + K K + + +L+ +L+ ++ R
Sbjct: 375 LLNFILPDIFTSHD-EFESWFDFSEKNKNEATKEEEEKRRAQVVSKLHGILRPFILRRMK 433
Query: 421 --------RLKEHVMLQXXXXXXXXXXXXXXXSDLVAA-----------KTAVGPLKIDA 461
R KE +M + L A K + L I
Sbjct: 434 CDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGENAIRGQGWKGKLNNLVIQL 493
Query: 462 SENANEDMPLENFDEPDGKLSYQELGIAKLSGFCEWLSLHPLIEGSENAS--KMLIFAHH 519
+N N L+ + DG SY + ++ G C L + A+ K+LIF+
Sbjct: 494 RKNCNHPDLLQG--QIDG--SYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQW 549
Query: 520 HKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSF---RSSPEVKXXXXXXXXXXXXX 576
K+LD + + EKG RIDG+ +R+ + F +SS +
Sbjct: 550 TKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSI--FLLSTRAGGLGI 607
Query: 577 DFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLD 624
+ + A + + P + LQA DR HR GQT V+VY +++
Sbjct: 608 NLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIE 655
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 78.6 bits (192), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 114/255 (44%), Gaps = 42/255 (16%)
Query: 197 LLPFQMDGLRFAL---RRGGR-CLIADDMGLGKTLQAIA----IAGCFRDEGPILVVCPA 248
L P+Q+ G+ F L ++G ++AD+MGLGKT+QAI ++ D GP LVVCPA
Sbjct: 213 LKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLSRLNNDPGPHLVVCPA 272
Query: 249 VLRYSWAEELERWLPLFLPADIH----LVFGHQDNPVHLKRCP---RVVVISYTMLHRL- 300
+ +W EL +W P F H + + N + P V+++ Y++ R
Sbjct: 273 SVLENWERELRKWCPSFTVLQYHGAARAAYSRELNSLSKAGKPPPFNVLLVCYSLFERHS 332
Query: 301 ------RKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSL 354
RK + W+ +++DE+H + K K ++ VA + ++L+GTP
Sbjct: 333 EQQKDDRKVLKRWRWSCVLMDEAHAL----KDKNSYRWKNLMSVARNANQRLMLTGTPLQ 388
Query: 355 SRPYDIYHQINMLWPGLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEELNVLLK 414
+ ++++ + + P + F DLK + + K +
Sbjct: 389 NDLHELWSLLEFMLPDI-------FTTENVDLKKLLNAEDTELITRMKSIL--------- 432
Query: 415 QTVMIRRLKEHVMLQ 429
++RRLK VM Q
Sbjct: 433 GPFILRRLKSDVMQQ 447
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 491 LSGFCEWLS-LHPLIEGSENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDR 549
LS C L+ L P ++ S ++LIF+ +LD ++ + G+++ R+DG+T DR
Sbjct: 586 LSAKCRTLAELLPSMKKS--GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDR 643
Query: 550 QSAVVSFRSSPEVKXXXXXXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQT 609
Q+ V +F + + + + A V+ ++ P + QAEDR HR GQT
Sbjct: 644 QTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQT 703
Query: 610 NAVNVYIFCAKDTLDESHWKNLNKSL 635
V ++ K T+DE+ ++ + L
Sbjct: 704 KPVTIFRLVTKSTVDENIYEIAKRKL 729
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 128/269 (47%), Gaps = 44/269 (16%)
Query: 189 LPGTIRRALLPFQMDGLRFALR-----RGGRCLIADDMGLGKTLQAIAI----------A 233
+P +I LL Q +G++F GG ++ DDMGLGKT+Q IA A
Sbjct: 131 VPASINCRLLEHQREGVKFMYNLYKNNHGG--ILGDDMGLGKTIQTIAFLAAVYGKDGDA 188
Query: 234 G--CF--RDEGPILVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLK---RC 286
G C D+GP+L++CP+ + ++W E RW F + H G + + K R
Sbjct: 189 GESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYH---GSNRDMILEKLKARG 245
Query: 287 PRVVVISYTMLHRLRKSMLER-EWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRI 345
V+V S+ R++ +L W ++I DE+H + K + + +A L++ +K R
Sbjct: 246 VEVLVTSFDTF-RIQGPVLSGINWEIVIADEAHRL----KNEKSKLYEACLEIKTKKR-- 298
Query: 346 ILLSGTPSLSRPYDIYHQINMLWPGLLGKNKY--EFAKTYCDLKYMKGVQGKYFANYSKG 403
I L+GT ++ ++++ + PG LG ++ +F L ++ K
Sbjct: 299 IGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQIADK- 357
Query: 404 VRLEELNVLLKQTVMIRRLKE----HVML 428
R + L LL++ M+RR KE H+M+
Sbjct: 358 -RKQHLGSLLRK-YMLRRTKEETIGHLMM 384
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%)
Query: 510 ASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXX 569
K+L+F++ ++LD +++F+ KG SF R+DG+T RQS V F +SP +
Sbjct: 544 GDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLIST 603
Query: 570 XXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ A VV + P+ LQA+DR+ R GQ V V+ + +L+E
Sbjct: 604 KAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEE 659
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 124/256 (48%), Gaps = 32/256 (12%)
Query: 190 PGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGCFRDE----GPI 242
P + L +QM GL++ + +G ++AD+MGLGKT+QA+A +E GP
Sbjct: 579 PELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPF 638
Query: 243 LVVCPAVLRYSWAEELERW------LPLFLPADIHLVFGHQDNPVHLKRCP---RVVVIS 293
LVV PA + +WA+E+ R+ LP + + NP + R +++ S
Sbjct: 639 LVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRMYRRDAGFHILITS 698
Query: 294 YTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPS 353
Y +L K +W +++DE+ + K+S K +L + R +LL+GTP
Sbjct: 699 YQLLVTDEKYFRRVKWQYMVLDEAQAI----KSSSSIRWKTLLSFNCRNR--LLLTGTPI 752
Query: 354 LSRPYDIYHQINMLWPGLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEELNVL- 412
+ +++ ++ + P +L N +F + + KG++ A + + +LN L
Sbjct: 753 QNNMAELWALLHFIMP-MLFDNHDQFNEWFS-----KGIEN--HAEHGGTLNEHQLNRLH 804
Query: 413 -LKQTVMIRRLKEHVM 427
+ + M+RR+K+ V+
Sbjct: 805 AILKPFMLRRVKKDVV 820
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 7/149 (4%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
++L+FA K+L+ +++++ + ++R+DG++ DR+ V F+ ++
Sbjct: 1224 RVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1283
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNL 631
+ + A V+F E PT+ LQA DRAHR GQT V VY K+T++E
Sbjct: 1284 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEE------ 1337
Query: 632 NKSLHRVSCTTDGKYDAMKEIEVEGISYL 660
K LHR S + M V+G +L
Sbjct: 1338 -KILHRASQKNTVQQLVMTGGHVQGDDFL 1365
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 24/212 (11%)
Query: 188 KLPGTIRRALLPFQMDG---LRFALRRGGRCLIADDMGLGKTLQAIAIAGCFR------- 237
KL ++ L +Q +G L F R ++ DDMGLGKTLQA AI
Sbjct: 1473 KLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGST 1532
Query: 238 ---DEGPILVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLK---RCPRVVV 291
D P ++VCP+ L WA E+E+++ L L + + V QD V L+ V++
Sbjct: 1533 DELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDR-VSLREQFNNHNVII 1591
Query: 292 ISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGT 351
SY ++ + + + W I+DE H ++ K+ +K + K + ++LSGT
Sbjct: 1592 TSYDVVRKDVDYLTQFSWNYCILDEGHIIK-NAKSKITAAVKQL-----KAQHRLILSGT 1645
Query: 352 PSLSRPYDIYHQINMLWPGLLGKNKYEFAKTY 383
P + +++ + L PG LG + +F +Y
Sbjct: 1646 PIQNNIMELWSLFDFLMPGFLGTER-QFQASY 1676
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 512 KMLIFAHHHKVLDGVQEFICE---KGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXX 568
++LIFA H +LD +++ + + K ++++R+DG+ + R V +F S P +
Sbjct: 1863 RVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLT 1922
Query: 569 XXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ + A +VF+E P QA DRAHR GQ VNV+ + TL+E
Sbjct: 1923 THVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEE 1979
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 188 KLPGTIRRALLPFQMDG---LRFALRRGGRCLIADDMGLGKTLQAIAIAGCFR------- 237
KL ++ L +Q +G L F R ++ DDMGLGKTLQA AI
Sbjct: 1442 KLCTELKVQLRRYQQEGINWLGFLKRFKLHGILCDDMGLGKTLQASAIVASDAAERRGST 1501
Query: 238 ---DEGPILVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLK---RCPRVVV 291
D P ++VCP+ L WA E+E+++ L L + + V QD V L+ V++
Sbjct: 1502 DELDVFPSIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDR-VSLREQFNNHNVII 1560
Query: 292 ISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGT 351
SY ++ + + + W I+DE H ++ + +I A + R+I LSGT
Sbjct: 1561 TSYDVVRKDVDYLTQFSWNYCILDEGHIIKNAKS-----KITAAVKQLKAQHRLI-LSGT 1614
Query: 352 PSLSRPYDIYHQINMLWPGLLGKNKYEFAKTY 383
P + +++ + L PG LG + +F +Y
Sbjct: 1615 PIQNNIMELWSLFDFLMPGFLGTER-QFQASY 1645
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 512 KMLIFAHHHKVLDGVQEFICE---KGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXX 568
++LIFA H +LD +++ + + K ++++R+DG+ + R V +F S P +
Sbjct: 1832 RVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVLLLT 1891
Query: 569 XXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ + A +VF+E P QA DRAHR GQ VNV+ + TL+E
Sbjct: 1892 THVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEE 1948
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/256 (28%), Positives = 121/256 (47%), Gaps = 30/256 (11%)
Query: 188 KLPGTIRRALLPFQMDGLRFAL---RRGGRCLIADDMGLGKTLQAIAIAGCFRDE----G 240
KLP ++ +L +Q GL + + + ++AD+MGLGKT+ IA+ + G
Sbjct: 527 KLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWG 586
Query: 241 PILVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKR-------CPRVVVIS 293
P L+V P + +W E +W P F I FG LKR V + +
Sbjct: 587 PHLIVVPTSVMLNWETEFLKWCPAF---KILTYFGSA-KERKLKRQGWMKLNSFHVCITT 642
Query: 294 YTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPS 353
Y ++ + K ++W LI+DE+H + K + + + +L+ SK R ILL+GTP
Sbjct: 643 YRLVIQDSKMFKRKKWKYLILDEAHLI----KNWKSQRWQTLLNFNSKRR--ILLTGTPL 696
Query: 354 LSRPYDIYHQINMLWPGLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEELNVLL 413
+ +++ ++ L P + ++ EF +C+ V+G+ N RL NVL
Sbjct: 697 QNDLMELWSLMHFLMPHVFQSHQ-EFKDWFCN-PIAGMVEGQEKINKEVIDRLH--NVL- 751
Query: 414 KQTVMIRRLKEHVMLQ 429
+ ++RRLK V Q
Sbjct: 752 -RPFLLRRLKRDVEKQ 766
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 65/122 (53%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
+ LIF K+LD ++ FI G +++R+DG+T +RQ+ + F ++P++
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILSTRS 1152
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNL 631
+ A V+F + P + QA+DR HR GQT V++Y ++ T++E+ K
Sbjct: 1153 GGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKA 1212
Query: 632 NK 633
N+
Sbjct: 1213 NQ 1214
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 7/149 (4%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
++L+FA K+L+ +++++ + ++R+DG++ DR+ V F+ ++
Sbjct: 1257 RVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRA 1316
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNL 631
+ + A V+F E PT+ LQA DRAHR GQT V VY K+T++E
Sbjct: 1317 GGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEE------ 1370
Query: 632 NKSLHRVSCTTDGKYDAMKEIEVEGISYL 660
K LHR S + M V+G +L
Sbjct: 1371 -KILHRASQKNTVQQLVMTGGHVQGDDFL 1398
Score = 63.5 bits (153), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 65/289 (22%)
Query: 190 PGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGCFRDE----GPI 242
P + L +QM GL++ + +G ++AD+MGLGKT+QA+A +E GP
Sbjct: 579 PELFKGTLKEYQMKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPF 638
Query: 243 LVVCPAVLRYSWAEELERW------LPLFLPADIHLVFGHQDNPVHL------------- 283
LVV PA + +WA+E+ R+ LP + + NP +
Sbjct: 639 LVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRVMFFSTWIISFDPW 698
Query: 284 --------KRCPRVV---------------VISYTMLHRLRKSMLEREWALLIVDESHHV 320
KR VV + SY +L K +W +++DE+ +
Sbjct: 699 AVRQICICKRACNVVRFQTLSDMDAGFHILITSYQLLVTDEKYFRRVKWQYMVLDEAQAI 758
Query: 321 RCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYDIYHQINMLWPGLLGKNKYEFA 380
K+S K +L + R +LL+GTP + +++ ++ + P +L N +F
Sbjct: 759 ----KSSSSIRWKTLLSFNCRNR--LLLTGTPIQNNMAELWALLHFIMP-MLFDNHDQFN 811
Query: 381 KTYCDLKYMKGVQGKYFANYSKGVRLEELNVL--LKQTVMIRRLKEHVM 427
+ + KG++ A + + +LN L + + M+RR+K+ V+
Sbjct: 812 EWFS-----KGIENH--AEHGGTLNEHQLNRLHAILKPFMLRRVKKDVV 853
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 93/193 (48%), Gaps = 29/193 (15%)
Query: 197 LLPFQMDGLRFALRRGGRCL---IADDMGLGKTLQAIAIAGCFRDE----GPILVVCPAV 249
L +Q++GL++ + L +AD+MGLGKT+Q I++ + GP L+V P
Sbjct: 403 LRSYQLEGLQWMVSLFNNNLNGILADEMGLGKTIQTISLIAYLLENKGVPGPYLIVAPKA 462
Query: 250 LRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPR----------VVVISYTMLHR 299
+ +W E W+P + A ++ D + ++ R V++ Y ++ R
Sbjct: 463 VLPNWVNEFATWVP-SIAAFLY------DGRLEERKAIREKIAGEGKFNVLITHYDLIMR 515
Query: 300 LRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYD 359
+ + + EW +IVDE H ++ + A + L +++R +LL+GTP + +
Sbjct: 516 DKAFLKKIEWYYMIVDEGHRLKNHESA-----LAKTLLTGYRIKRRLLLTGTPIQNSLQE 570
Query: 360 IYHQINMLWPGLL 372
++ +N L P +
Sbjct: 571 LWSLLNFLLPHIF 583
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 190 PGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGCFRD----EGPI 242
P I+ L +Q+ GL + +R G ++AD+MGLGKTLQ I++ + GP
Sbjct: 187 PACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 246
Query: 243 LVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPRVV------VISYTM 296
+VV P +W E+ R+ P+ G+ + H++ V V S+ M
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPEERRHIREELLVAGKFDICVTSFEM 303
Query: 297 LHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSR 356
+ + ++ W +I+DE+H ++ +E + + + S R +L++GTP +
Sbjct: 304 AIKEKTTLRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYR-LLITGTPLQNN 357
Query: 357 PYDIYHQINMLWP 369
++++ +N L P
Sbjct: 358 LHELWALLNFLLP 370
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 511 SKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSF-RSSPEVKXXXXXX 569
S++LIF+ ++LD +++++ +G + RIDGNT +R +++ ++ + E
Sbjct: 512 SRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLST 571
Query: 570 XXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLD 624
+ + A V+ + P V LQA+DRAHR GQ V V+ FC ++ ++
Sbjct: 572 RAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIE 626
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 92/193 (47%), Gaps = 22/193 (11%)
Query: 190 PGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGCFRD----EGPI 242
P I+ L +Q+ GL + +R G ++AD+MGLGKTLQ I++ + GP
Sbjct: 187 PACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 246
Query: 243 LVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPRVV------VISYTM 296
+VV P +W E+ R+ P+ G+ + H++ V V S+ M
Sbjct: 247 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPEERRHIREELLVAGKFDICVTSFEM 303
Query: 297 LHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSR 356
+ + ++ W +I+DE+H ++ +E + + + S R +L++GTP +
Sbjct: 304 AIKEKTTLRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYR-LLITGTPLQNN 357
Query: 357 PYDIYHQINMLWP 369
++++ +N L P
Sbjct: 358 LHELWALLNFLLP 370
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 511 SKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSF-RSSPEVKXXXXXX 569
S++LIF+ ++LD +++++ +G + RIDGNT +R +++ ++ + E
Sbjct: 512 SRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLST 571
Query: 570 XXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLD 624
+ + A V+ + P V LQA+DRAHR GQ V V+ FC ++ ++
Sbjct: 572 RAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIE 626
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 190 PGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGCFRD----EGPI 242
P I+ + +Q+ GL + +R G ++AD+MGLGKTLQ I++ + GP
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 243 LVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPRVV------VISYTM 296
+VV P +W E+ R+ P+ G+ + H++ V V S+ M
Sbjct: 242 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPEERRHIREDLLVAGKFDICVTSFEM 298
Query: 297 LHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSR 356
+ + ++ W +I+DE+H ++ +E + + + S R +L++GTP +
Sbjct: 299 AIKEKTALRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYR-LLITGTPLQNN 352
Query: 357 PYDIYHQINMLWPGLL 372
++++ +N L P +
Sbjct: 353 LHELWALLNFLLPEIF 368
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 508 ENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSF-RSSPEVKXXX 566
E S++LIF+ ++LD +++++ +G + RIDGNT +R +++ ++ + E
Sbjct: 504 ERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 563
Query: 567 XXXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ + A V+ + P V LQA+DRAHR GQ V V+ FC + ++E
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEE 622
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 190 PGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGCFRD----EGPI 242
P I+ + +Q+ GL + +R G ++AD+MGLGKTLQ I++ + GP
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 243 LVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPRVV------VISYTM 296
+VV P +W E+ R+ P+ G+ + H++ V V S+ M
Sbjct: 242 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPEERRHIREDLLVAGKFDICVTSFEM 298
Query: 297 LHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSR 356
+ + ++ W +I+DE+H ++ +E + + + S R +L++GTP +
Sbjct: 299 AIKEKTALRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYR-LLITGTPLQNN 352
Query: 357 PYDIYHQINMLWPGLL 372
++++ +N L P +
Sbjct: 353 LHELWALLNFLLPEIF 368
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 508 ENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSF-RSSPEVKXXX 566
E S++LIF+ ++LD +++++ +G + RIDGNT +R +++ ++ + E
Sbjct: 504 ERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 563
Query: 567 XXXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ + A V+ + P V LQA+DRAHR GQ V V+ FC + ++E
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEE 622
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 190 PGTIRRALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGCFRD----EGPI 242
P I+ + +Q+ GL + +R G ++AD+MGLGKTLQ I++ + GP
Sbjct: 182 PSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGINGPH 241
Query: 243 LVVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPRVV------VISYTM 296
+VV P +W E+ R+ P+ G+ + H++ V V S+ M
Sbjct: 242 MVVAPKSTLGNWMNEIRRFCPVLRAVKF---LGNPEERRHIREDLLVAGKFDICVTSFEM 298
Query: 297 LHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSR 356
+ + ++ W +I+DE+H ++ +E + + + S R +L++GTP +
Sbjct: 299 AIKEKTALRRFSWRYIIIDEAHRIK-----NENSLLSKTMRLFSTNYR-LLITGTPLQNN 352
Query: 357 PYDIYHQINMLWPGLL 372
++++ +N L P +
Sbjct: 353 LHELWALLNFLLPEIF 368
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 508 ENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSF-RSSPEVKXXX 566
E S++LIF+ ++LD +++++ +G + RIDGNT +R +++ ++ + E
Sbjct: 504 ERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFL 563
Query: 567 XXXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ + A V+ + P V LQA+DRAHR GQ V V+ FC + ++E
Sbjct: 564 LSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEE 622
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 112/498 (22%), Positives = 187/498 (37%), Gaps = 73/498 (14%)
Query: 197 LLPFQMDGLRFAL---------RRGGRCLIADDMGLGKTLQAIAIAGCFRDEG----PI- 242
L P Q +G++F C++ADDMGLGKTLQ+I + +G P+
Sbjct: 180 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMV 239
Query: 243 ---LVVCPAVLRYSWAEELERW------LPLFLPADIHLVFGHQDNPVHLKRCPRVVVIS 293
++V P L +W E+++W L + V D+ + +V++IS
Sbjct: 240 KKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLIIS 299
Query: 294 YTMLHRLRKSMLEREWA-LLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTP 352
Y + E LLI DE+H ++ Q + +A+ + K R +LLSGTP
Sbjct: 300 YETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTN----RALASLTCKRR--VLLSGTP 353
Query: 353 SLSRPYDIYHQINMLWPGLLG-----KNKYEFAKTYCD-----LKYMKGVQGKYFANYSK 402
+ + + +N PG LG ++ YE A C + K + A S
Sbjct: 354 MQNDLEEFFAMVNFTNPGSLGDAAHFRHYYE-APIICGREPTATEEEKNLAADRSAELSS 412
Query: 403 GVR---LEELNVLL--------------KQTVMIRRLKEHVMLQXXXXXXXXXXXXXXXS 445
V L N LL K T + + +Q +
Sbjct: 413 KVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQTTYNGCLCMQLKRALADNAKQTKVLA 472
Query: 446 DLVAAKTAVGPLKI--DASENAN----------EDMPLENFDEPDGKLSYQELGIAKLSG 493
+ A K K+ D ++ N E P E F G + + +LSG
Sbjct: 473 YITALKKLCNHPKLIYDTIKSGNPGTVGFENCLEFFPAEMFSGRSGAWTGGDGAWVELSG 532
Query: 494 FCEWLSLHPLIEGSENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAV 553
LS + ++++ +++ + LD + E+ F+R+DG+T RQ +
Sbjct: 533 KMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQK-L 591
Query: 554 VSFRSSPEVKXXXXXXXXXXXXXDFSI--AQDVVFLELPQCPTVMLQAEDRAHRRGQTNA 611
V+ + P ++ A +V + P QA R R GQ
Sbjct: 592 VNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKR 651
Query: 612 VNVYIFCAKDTLDESHWK 629
V VY F + T++E ++
Sbjct: 652 VYVYRFLSTGTIEEKVYQ 669
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 197 LLPFQMDGLRFAL---RRGGRCLIADDMGLGKTLQAIAIAGCFRDE----GPILVVCPAV 249
L +Q++GL++ + ++AD+MGLGKT+Q IA+ + GP L++ P
Sbjct: 386 LRSYQLEGLQWMVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKA 445
Query: 250 LRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLK-RCP----RVVVISYTMLHRLRKSM 304
+ +W E W P L G ++ ++ R V++ Y ++ R + +
Sbjct: 446 VLPNWENEFALWAP---SISAFLYDGSKEKRTEIRARIAGGKFNVLITHYDLIMRDKAFL 502
Query: 305 LEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYDIYHQI 364
+ +W +IVDE H ++ + A + L +++R +LL+GTP + +++ +
Sbjct: 503 KKIDWNYMIVDEGHRLKNHECA-----LAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLL 557
Query: 365 NMLWPGLL 372
N L P +
Sbjct: 558 NFLLPHIF 565
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 57/119 (47%)
Query: 507 SENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXX 566
S+ A K +IF+ +LD V+ I E GI F R+DG R AV F P+VK
Sbjct: 889 SQGAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVML 948
Query: 567 XXXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ A V+ L+L PT QA DRAHR GQT V V KDT+++
Sbjct: 949 MSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVED 1007
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 26/196 (13%)
Query: 197 LLPFQMDGLRFALRRGGRCL---IADDMGLGKTLQAIAIAGCF-----RDEGPILVVCPA 248
L +QM+GLR+ + L +AD+MGLGKT+Q I++ C+ D GP LVV P+
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLI-CYLMETKNDRGPFLVVVPS 812
Query: 249 VLRYSWAEELERWLPLF-------LPADIHLVFGHQDNPVHLKRCPRVVVISYTMLHRLR 301
+ W E+ W P P + +F Q VH K + Y M R
Sbjct: 813 SVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQ--IVHQKFNVLLTTYEYLMNKHDR 870
Query: 302 KSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKV-RRIILLSGTPSLSRPYDI 360
+ + W +I+DE H ++ K D+ V +LL+GTP + ++
Sbjct: 871 PKLSKIHWHYIIIDEGHRIKNAS-------CKLNADLKHYVSSHRLLLTGTPLQNNLEEL 923
Query: 361 YHQINMLWPGLLGKNK 376
+ +N L P + ++
Sbjct: 924 WALLNFLLPNIFNSSE 939
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 26/196 (13%)
Query: 197 LLPFQMDGLRFALRRGGRCL---IADDMGLGKTLQAIAIAGCF-----RDEGPILVVCPA 248
L +QM+GLR+ + L +AD+MGLGKT+Q I++ C+ D GP LVV P+
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLI-CYLMETKNDRGPFLVVVPS 812
Query: 249 VLRYSWAEELERWLPLF-------LPADIHLVFGHQDNPVHLKRCPRVVVISYTMLHRLR 301
+ W E+ W P P + +F Q VH K + Y M R
Sbjct: 813 SVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQ--IVHQKFNVLLTTYEYLMNKHDR 870
Query: 302 KSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKV-RRIILLSGTPSLSRPYDI 360
+ + W +I+DE H ++ K D+ V +LL+GTP + ++
Sbjct: 871 PKLSKIHWHYIIIDEGHRIKNAS-------CKLNADLKHYVSSHRLLLTGTPLQNNLEEL 923
Query: 361 YHQINMLWPGLLGKNK 376
+ +N L P + ++
Sbjct: 924 WALLNFLLPNIFNSSE 939
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 26/196 (13%)
Query: 197 LLPFQMDGLRFALRRGGRCL---IADDMGLGKTLQAIAIAGCF-----RDEGPILVVCPA 248
L +QM+GLR+ + L +AD+MGLGKT+Q I++ C+ D GP LVV P+
Sbjct: 754 LREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLI-CYLMETKNDRGPFLVVVPS 812
Query: 249 VLRYSWAEELERWLPLF-------LPADIHLVFGHQDNPVHLKRCPRVVVISYTMLHRLR 301
+ W E+ W P P + +F Q VH K + Y M R
Sbjct: 813 SVLPGWQSEINFWAPSIHKIVYCGTPDERRKLFKEQ--IVHQKFNVLLTTYEYLMNKHDR 870
Query: 302 KSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKV-RRIILLSGTPSLSRPYDI 360
+ + W +I+DE H ++ K D+ V +LL+GTP + ++
Sbjct: 871 PKLSKIHWHYIIIDEGHRIKNAS-------CKLNADLKHYVSSHRLLLTGTPLQNNLEEL 923
Query: 361 YHQINMLWPGLLGKNK 376
+ +N L P + ++
Sbjct: 924 WALLNFLLPNIFNSSE 939
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 38/228 (16%)
Query: 190 PGTIRRALLPFQMDGL---RFALRRGGRCLIADDMGLGKTLQAIAIAGCFRDEG--PILV 244
P ++ L P+Q++GL RF+ + ++AD+MGLGKT+Q+IA+ +E P LV
Sbjct: 266 PEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLIPHLV 325
Query: 245 VCPAVLRYSWAEELERWLP------LFLPADIHLVF-------------------GHQDN 279
+ P +W E W P F A V G +
Sbjct: 326 IAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKSGQISS 385
Query: 280 PVHLKRCP-RVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDV 338
KR V++ SY M++ + +W +IVDE H + K + + ++
Sbjct: 386 ESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRL----KNKDSKLFSSLTQY 441
Query: 339 ASKVRRIILLSGTPSLSRPYDIYHQINMLWPGLLGKNKYEFAKTYCDL 386
+S R ILL+GTP + +++ ++ L G G + EF + + D+
Sbjct: 442 SSNHR--ILLTGTPLQNNLDELFMLMHFLDAGKFGSLE-EFQEEFKDI 486
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 30/201 (14%)
Query: 197 LLPFQMDGLRFAL---------RRGGRCLIADDMGLGKTLQAIAIAGCFRDEG----PI- 242
L P Q +G++F C++ADDMGLGKTLQ+I + +G P+
Sbjct: 180 LRPHQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMV 239
Query: 243 ---LVVCPAVLRYSWAEELERW------LPLFLPADIHLVFGHQDNPVHLKRCPRVVVIS 293
++V P L +W E+++W L + V D+ + +V++IS
Sbjct: 240 KKAIIVTPTSLVSNWEAEIKKWVGDRIQLIALCESTRDDVLSGIDSFTRPRSALQVLIIS 299
Query: 294 YTMLHRLRKSMLEREWA-LLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTP 352
Y + E LLI DE+H ++ Q + +A+ + K R +LLSGTP
Sbjct: 300 YETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTN----RALASLTCKRR--VLLSGTP 353
Query: 353 SLSRPYDIYHQINMLWPGLLG 373
+ + + +N PG LG
Sbjct: 354 MQNDLEEFFAMVNFTNPGSLG 374
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 119/562 (21%), Positives = 227/562 (40%), Gaps = 76/562 (13%)
Query: 148 EIPWGTLNVVERLSHSFAAGRWMPVRPEHLSDEEVDCLIEKLPGTIRRALLPFQMDGLRF 207
++P T+ RL AA + + S+ DC + T++ P Q++G+ +
Sbjct: 9 KVPSTTMEYERRLE---AAAEIILEKEAKFSNTPPDCSEFGVTATLK----PHQVEGVSW 61
Query: 208 ALRR---GGRCLIA-DDMGLGKTLQAIAIAGC--FRD--EGPILVVCPAVLRYSWAEELE 259
+++ G ++ D MGLGKTLQAI+ FR GP LV+CP + W E+
Sbjct: 62 LIQKYLLGVNVVLELDQMGLGKTLQAISFLSYLKFRQGLPGPFLVLCPLSVTDGWVSEIN 121
Query: 260 RWLP----LFLPADIHLVFGHQDNPV-HLKRCPR-------VVVISYTMLHRLRKSMLER 307
R+ P L D + + + H+K+ + V++ +Y + + + +
Sbjct: 122 RFTPNLEVLRYVGDKYCRLDMRKSMYDHVKKSSKGHFLPFDVLLTTYDIALVDQDFLSQI 181
Query: 308 EWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYDIYHQINML 367
W I+DE+ ++ + VL + R +L++GTP + +++ ++
Sbjct: 182 PWQYAIIDEAQRLKNPNSV-----LYNVLLEQFLIPRRLLITGTPIQNNLTELWALMHFC 236
Query: 368 WP------------------GLLGKNKYEFAKTYCDLKYMKGVQGKYFANYSKGVRLEEL 409
P GL G + +TY LK+ + G + +K + +E
Sbjct: 237 MPLVFGTLDQFLSAFKETGDGLSGLDVSNDKETYKSLKF---ILGAFMLRRTKSLLIESG 293
Query: 410 NVLLKQTVMIRRLKEHVMLQXXXXXXXXXXXXXXXSDLVAA---KTAVGPLKIDASENAN 466
N++L + + V LQ +L + T++ + I + +
Sbjct: 294 NLVLPPLTELTVMVPLVSLQKKIYTSILRKELPGLLELSSGGSNHTSLQNIVIQLRKACS 353
Query: 467 EDMPLENFDEPDGKLSYQELGIAKLSGFCEWLSLHPLIEG-SENASKMLIFAHHHKVLDG 525
EP+ ++E G + + L L L++ ++ ++L+F+ LD
Sbjct: 354 HPYLFPGI-EPE---PFEE-GEHLVQASGKLLVLDQLLKRLHDSGHRVLLFSQMTSTLDI 408
Query: 526 VQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPE-----------VKXXXXXXXXXXX 574
+Q+F+ + S+ R+DG+ A +R +A+ +F + E
Sbjct: 409 LQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSEVDGSNAFVFMISTRAGGV 468
Query: 575 XXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKS 634
+ A V+F E P V QA RAHR GQ + V + +++E + +
Sbjct: 469 GLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEEVILRRAERK 528
Query: 635 LHRVSCTTDGKYDAMKEIEVEG 656
L ++S G D M+E E +G
Sbjct: 529 L-QLSHNVVG--DNMEEKEEDG 547
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
K ++F K+LD ++ + GI + R DG R +AV F + P+V
Sbjct: 1073 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKA 1132
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ A V+ L+L PT QA DRAHR GQT V V F KDT+++
Sbjct: 1133 ASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVED 1186
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 52/229 (22%)
Query: 189 LPGTIRRALLPFQMDGLRFAL-----RRGGRCLIADDMGLGKTLQAIAIAGCF---RDEG 240
+P I R L +Q G+++ R GG +I D+MGLGKT+Q ++ G +
Sbjct: 377 IPECIFRKLFDYQRVGVQWLWELHCQRAGG--IIGDEMGLGKTIQVLSFLGSLHFSKMYK 434
Query: 241 PILVVCPAVLRYSWAEELERWLPLFLPADIH-------------------------LVFG 275
P +++CP L W E ++W P F +H +
Sbjct: 435 PSIIICPVTLLRQWRREAQKWYPDFHVEILHDSAQDSGHGKGQGKASESDYDSESSVDSD 494
Query: 276 HQDNPVHLKRCPR-----------VVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQ 324
H+ + K+ +++ +Y L + +L EW ++DE H +R
Sbjct: 495 HEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPN 554
Query: 325 KASEPEEIKAVLDVASKVRRIILLSGTPSLSRPYDIYHQINMLWPGLLG 373
+I V V RII ++G P ++ +++ + ++PG LG
Sbjct: 555 -----SDITLVCKQLQTVHRII-MTGAPIQNKLTELWSLFDFVFPGKLG 597
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/292 (20%), Positives = 120/292 (41%), Gaps = 37/292 (12%)
Query: 508 ENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXX 567
+ ++L+F+ ++LD ++ F+ S+ R+DG T + R + + F +S ++
Sbjct: 741 QQGHRVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVL 800
Query: 568 XXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESH 627
+ + A V+ + P+ +QA +RA R GQ V VY + T++E
Sbjct: 801 TTKVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKV 860
Query: 628 WKN-------LNKSLHRVSCTTDGKYDAMKEIEVEGISYLDPSLKTESLEKKSTFKDASS 680
+ NK L K MK++ + D S E + F +
Sbjct: 861 YHRQIYKHFLTNKILKNPQQRRFFKARDMKDLFI----LKDDGDSNASTETSNIFSQLAE 916
Query: 681 EI-----QVDKHPSA-----------VNSNESEASQDDKSDEPASFENNTIQGANIMDEN 724
EI Q DK P + +S +++ DK+ E E N ++ ++ D +
Sbjct: 917 EINIVGVQSDKKPESDTQLALHKTAEGSSEQTDVEMTDKTGEAMDEETNILK--SLFDAH 974
Query: 725 VPCLDLGKDSVLDGN-------LDVDVSYTVERCSKKCLKDDKVIEDKKSIS 769
+ D++++ N L+ S +R + + L+ +++ ++SIS
Sbjct: 975 GIHSAVNHDAIMNANDEEEKMRLEHQASQVAQRAA-EALRQSRMLRSRESIS 1025
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
K ++F K+LD ++ + GI + R DG R +AV F + P+V
Sbjct: 1116 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKA 1175
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ A V+ L+L PT QA DRAHR GQT V V F KDT+++
Sbjct: 1176 ASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVED 1229
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 23/186 (12%)
Query: 180 EEVDCLIEKLPGTIRRALLPFQMDGL---RFALRRGGRCLIADDMGLGKTLQAIAIAGCF 236
++ D E L GT L +Q++GL R++ + ++AD+MGLGKT+Q+IA
Sbjct: 212 KQFDLTPEFLTGT----LHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASL 267
Query: 237 RDEG--PILVVCPAVLRYSWAEELERWLP----LFLPADIH---LVFGHQDNPVHLKRCP 287
+E P LVV P +W E W P + D +++ H+ ++
Sbjct: 268 FEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSK 327
Query: 288 -RVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRII 346
V++ +Y M+H + +W +I+DE H ++ QK+ + + I+
Sbjct: 328 FDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLK-NQKSKLYSSLSQFTS-----KHIV 381
Query: 347 LLSGTP 352
LL+GTP
Sbjct: 382 LLTGTP 387
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 23/186 (12%)
Query: 180 EEVDCLIEKLPGTIRRALLPFQMDGL---RFALRRGGRCLIADDMGLGKTLQAIAIAGCF 236
++ D E L GT L +Q++GL R++ + ++AD+MGLGKT+Q+IA
Sbjct: 171 KQFDLTPEFLTGT----LHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASL 226
Query: 237 RDEG--PILVVCPAVLRYSWAEELERWLP----LFLPADIH---LVFGHQDNPVHLKRCP 287
+E P LVV P +W E W P + D +++ H+ ++
Sbjct: 227 FEENLSPHLVVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDVIWEHEFYFSEGRKSK 286
Query: 288 -RVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRII 346
V++ +Y M+H + +W +I+DE H ++ QK+ + + I+
Sbjct: 287 FDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRLK-NQKSKLYSSLSQFTS-----KHIV 340
Query: 347 LLSGTP 352
LL+GTP
Sbjct: 341 LLTGTP 346
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
K ++F+ K+L+ ++ + I + R+DG R AV F + PEV
Sbjct: 967 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKA 1026
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNL 631
+ A V+ L+L PT QA DRAHR GQT V V F KDT+++
Sbjct: 1027 ASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQ 1086
Query: 632 NKSLHRVSCT--TDGKYDAMKEIEVEGISYL 660
K V+ D K + VE +SYL
Sbjct: 1087 QKKRMMVASAFGEDEKGSRQSHLTVEDLSYL 1117
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
K ++F+ K+L+ ++ + I + R+DG R AV F + PEV
Sbjct: 1125 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKA 1184
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNL 631
+ A V+ L+L PT QA DRAHR GQT V V F KDT+++
Sbjct: 1185 ASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQ 1244
Query: 632 NKSLHRVSCT--TDGKYDAMKEIEVEGISYL 660
K V+ D K + VE +SYL
Sbjct: 1245 QKKRMMVASAFGEDEKGSRQSHLTVEDLSYL 1275
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 4/116 (3%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNT--LARDRQSAVVSFRSSPEVKXXXXXX 569
K +IF+ +LD V+ + E I F R+DG +ARDR AV F + P+VK
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDR--AVKEFSNDPDVKVMIMSL 885
Query: 570 XXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDE 625
+ A V+ L+L PT QA DRAHR GQT V V K+T+++
Sbjct: 886 KAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVED 941
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 111/270 (41%), Gaps = 46/270 (17%)
Query: 181 EVDCLIEKLPGTIRR-ALLPFQMDGLRFALR---RGGRCLIADDMGLGKTLQAIAIAGC- 235
EV L E+ P +R AL Q++ L + R + ++AD+MGLGKT+ A A
Sbjct: 673 EVVTLTEQ-PQELRGGALFAHQLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSL 731
Query: 236 ---FRDEGPILVVCPAVLRYSWAEELERWLPLFLPADIHLVFG----------HQDNPVH 282
F P LV+ P +W E W PL + H H N
Sbjct: 732 YFEFGVARPCLVLVPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWHAKNSTG 791
Query: 283 LKRCP-----RVVVISYTMLHRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLD 337
+ P V++ +Y M+ + W +L+VDE H ++ ++ ++ ++L+
Sbjct: 792 TTKKPTSYKFNVLLTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSES-----KLFSLLN 846
Query: 338 VASKVRRIILLSGTPSLSRPYDIYHQINMLWPGLLGKNKYEFAKTYCDLKYMKGVQGKYF 397
S R +LL+GTP + ++Y+ +N L + F
Sbjct: 847 TFSFQHR-VLLTGTPLQNNIGEMYNLLNFL---------------QPSSFPSLSSFEERF 890
Query: 398 ANYSKGVRLEELNVLLKQTVMIRRLKEHVM 427
+ + ++EEL L+ M+RRLK+ M
Sbjct: 891 HDLTSAEKVEELKKLVAPH-MLRRLKKDAM 919
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 512 KMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXXXXXX 571
++LIF+ K+L+ +Q+ + G SF+RIDG T A DR V F+
Sbjct: 750 RVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQV 809
Query: 572 XXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWK 629
+ A V+ ++ P+ Q+ DRA+R GQT V VY T++E ++
Sbjct: 810 GGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYR 867
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 86/175 (49%), Gaps = 26/175 (14%)
Query: 191 GTIRRALLPFQMDGLRFALRRGGRCL---IADDMGLGKTLQAIAIAGCFR----DEGPIL 243
GT+R +Q+ GL++ L L +AD+MGLGKT+Q +A+ + GP L
Sbjct: 979 GTLR----DYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHL 1034
Query: 244 VVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHL---KRCP---RVVVISYTML 297
++ P + +W EL WLP + I+ V G +D L + C V+V +Y +
Sbjct: 1035 IIVPNAVLVNWKSELHTWLPSV--SCIYYV-GTKDQRSKLFSQEVCAMKFNVLVTTYEFI 1091
Query: 298 HRLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTP 352
R + + +W +I+DE+ Q+ + E + A + +R +LL+GTP
Sbjct: 1092 MYDRSKLSKVDWKYIIIDEA------QRMKDRESVLARDLDRYRCQRRLLLTGTP 1140
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 25/174 (14%)
Query: 191 GTIRRALLPFQMDGLRFALRRGGRCL---IADDMGLGKTLQAIAIAGCFR----DEGPIL 243
GT+R +Q+ GL++ L L +AD+MGLGKT+Q +A+ + GP L
Sbjct: 979 GTLR----DYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHL 1034
Query: 244 VVCPAVLRYSWAEELERWLPLFLPADIHLVFGHQDNPVHLKRCPR-----VVVISYTMLH 298
++ P + +W EL WLP + I+ V G +D L + V+V +Y +
Sbjct: 1035 IIVPNAVLVNWKSELHTWLPSV--SCIYYV-GTKDQRSKLFSQVKFEKFNVLVTTYEFIM 1091
Query: 299 RLRKSMLEREWALLIVDESHHVRCTQKASEPEEIKAVLDVASKVRRIILLSGTP 352
R + + +W +I+DE+ Q+ + E + A + +R +LL+GTP
Sbjct: 1092 YDRSKLSKVDWKYIIIDEA------QRMKDRESVLARDLDRYRCQRRLLLTGTP 1139
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%)
Query: 508 ENASKMLIFAHHHKVLDGVQEFICEKGISFVRIDGNTLARDRQSAVVSFRSSPEVKXXXX 567
+ ++K ++F+ LD + + + G+S V++ G+ R +A+ F+ P+ +
Sbjct: 678 DGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLM 737
Query: 568 XXXXXXXXXDFSIAQDVVFLELPQCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESH 627
+ ++A V ++ P V QA+DR HR GQ + V F ++T++E
Sbjct: 738 SLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTVEERI 797
Query: 628 WKNLNKSLHRVSCTTDGKYDAMKEIEVEGISYL 660
+ K T G +A+ ++ E + +L
Sbjct: 798 LRLQKKKELVFEGTVGGSQEAIGKLTEEDMRFL 830