Miyakogusa Predicted Gene

Lj0g3v0321829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0321829.1 Non Chatacterized Hit- tr|J3L9B6|J3L9B6_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB02G1,44.68,5e-19,seg,NULL,CUFF.21820.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26750.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Ubiquitin-...    60   5e-10

>AT3G26750.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Ubiquitin-conjugating enzyme E2C-binding protein
           (InterPro:IPR019193); Has 26 Blast hits to 25 proteins
           in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0;
           Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes -
           0 (source: NCBI BLink). | chr3:9840139-9841719 REVERSE
           LENGTH=526
          Length = 526

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 44/82 (53%), Gaps = 5/82 (6%)

Query: 68  PIPARVLLDADAPPTFRALSDHIEVKXXXXXXXXXXXXXXXXXQPSSR----PLSMDSDV 123
           PIP RVLLD ++P  F+AL DHIEV+                    SR    PL M  D+
Sbjct: 88  PIP-RVLLDTESPVNFKALDDHIEVRLVLLLPVDHPLVSDFNLVTDSREKSAPLVMGYDL 146

Query: 124 ENLSSHGEVDFYCRTCAFKLTK 145
           + LS  G V FYCR+C+ +LTK
Sbjct: 147 KTLSLMGGVHFYCRSCSNRLTK 168