Miyakogusa Predicted Gene

Lj0g3v0320939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0320939.1 Non Chatacterized Hit- tr|I1J6D5|I1J6D5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53942
PE,80.45,0,zf-C3HC4_3,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; ZF_RING_2,Zinc finger, RING-type; s,CUFF.21755.1
         (358 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination ...   407   e-114
AT1G55250.2 | Symbols:  | histone mono-ubiquitination 2 | chr1:2...   244   9e-65
AT1G55250.1 | Symbols: HUB2 | histone mono-ubiquitination 2 | ch...   243   2e-64
AT1G55250.4 | Symbols: HUB2 | histone mono-ubiquitination 2 | ch...   234   6e-62
AT1G55250.3 | Symbols: HUB2 | histone mono-ubiquitination 2 | ch...   233   1e-61
AT2G42030.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    52   9e-07

>AT2G44950.1 | Symbols: RDO4, HUB1 | histone mono-ubiquitination 1 |
           chr2:18542602-18548247 REVERSE LENGTH=878
          Length = 878

 Score =  407 bits (1046), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/356 (55%), Positives = 262/356 (73%)

Query: 3   VKDLRQTDKELKLFWEMFRRETIDSRDVMEARDAEYRAWAHVQSLKSSLDEHNLELRVKM 62
           V DL+ + +ELKLF +M++RE+ D+RD+ EA++ EYRAWAHVQSLKSSLDE NLELRVK 
Sbjct: 523 VCDLKNSHEELKLFLDMYKRESTDARDIAEAKEQEYRAWAHVQSLKSSLDEQNLELRVKA 582

Query: 63  ANEAEARSQQNLAAAEAEIADMRKKLEDSKREMLKLSDVLRSKNEENEAFLSEIETIGQA 122
           ANEAEA SQQ LAAAEAEIAD+R+K++D KR++ K SD+L+SK+EE+  +LSEI+TIG A
Sbjct: 583 ANEAEAVSQQMLAAAEAEIADLRQKMDDCKRDVAKHSDILKSKHEEHGTYLSEIQTIGSA 642

Query: 123 YDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLIMEKRVIEQEIHQANVSLNLY 182
           Y+D+  QNQ LL Q+TERDDYNIKL LEG+ +RQ QD+L+++K +++++I Q +   +  
Sbjct: 643 YEDIVPQNQQLLLQVTERDDYNIKLFLEGITSRQMQDTLLIDKYIMDKDIQQGSAYASFL 702

Query: 183 DVKAARIEDQLRHFSDQIQKLTEDKLQNSVTFENTQRRLADIRSSTQQVRDTVVEQQCKI 242
             K++RIEDQLR  +DQ QKL EDK Q SV+ EN Q++ ADI +  +Q R  + E   K+
Sbjct: 703 SKKSSRIEDQLRFCTDQFQKLAEDKYQKSVSLENLQKKRADIGNGLEQARSRLEESHSKV 762

Query: 243 SSSRVTYMELQXXXXXXXXXXXXXXXXXXVARRKFSRLKVQNEGSSLTEKLQQELGEYKE 302
             SR+ Y  L+                  +A++K SRL+   EGSS  +KL+QEL E+KE
Sbjct: 763 EQSRLDYGALELELEIERFNRRRIEEEMEIAKKKVSRLRSLIEGSSAIQKLRQELSEFKE 822

Query: 303 IIKCSICQDRTKEVVITKCYHLFCNTCMLKVTGSRHRKCPQCGTSFGANDVKPVYL 358
           I+KC  C DR KEVVITKCYHLFCN C+ K+TG+R +KCP C  SFG ND+KP+Y+
Sbjct: 823 ILKCKACNDRPKEVVITKCYHLFCNPCVQKLTGTRQKKCPTCSASFGPNDIKPIYI 878


>AT1G55250.2 | Symbols:  | histone mono-ubiquitination 2 |
           chr1:20610166-20612302 FORWARD LENGTH=383
          Length = 383

 Score =  244 bits (622), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 139/343 (40%), Positives = 206/343 (60%), Gaps = 13/343 (3%)

Query: 22  RETIDSRDVMEARDAEYRAWAHVQSLKSSLDEHNLELRVKMANEAEARSQQNLAAAEAEI 81
           RE  D R + E +D++ +A A  + LK+ LDEH LELRVK A+E E+  Q+ LA A+AEI
Sbjct: 48  RECNDDRGLAEIKDSQRKAQAQAEELKNVLDEHFLELRVKAAHETESACQERLATAKAEI 107

Query: 82  ADMRKKLEDSKREMLKLSDVLRSKNEENEAFLSEIETIGQAYDDMQTQNQHLLQQITERD 141
           A++R +L+ S+RE+L+L + ++ K +E EA ++E+ETIGQAY+DMQTQNQHLLQQ+ ERD
Sbjct: 108 AELRTQLDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERD 167

Query: 142 DYNIKLVLEGVRARQKQDSLIMEKRVIEQEIHQANVSLNLYDVKAARIEDQLRHFSDQIQ 201
           DYNIKLV E V+ +   ++ + EK+V+E+++HQ N S+  +  + A  E+Q++    +  
Sbjct: 168 DYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAY 227

Query: 202 KLTEDKLQNSVTFENTQRRLADIRSSTQQVRDTVVEQQCKISSSRVTYMELQXXXXXXXX 261
           KL ++     ++ E T+  +AD     + ++  V       SSS   Y ++         
Sbjct: 228 KLIQEDRHLVISLETTKWEVADADKEFRWLKSAV-------SSSEKEYEQISRRTDDIKL 280

Query: 262 XXXXXXXXXXVARRKFSRLKVQNE--GSSLTE----KLQQELGEYKEIIKCSICQDRTKE 315
                         +   L  + E  GS   E    +LQ+E+   K I+KC +C DR KE
Sbjct: 281 ELDDERREKKKLEEELMELNKELEELGSESVEAAIVRLQEEVKNCKNILKCGVCFDRPKE 340

Query: 316 VVITKCYHLFCNTCMLKVTGSRHRKCPQCGTSFGANDVKPVYL 358
           VVI KCYHLFC  C+ +    RHRKCP CGT+FG NDV+ V +
Sbjct: 341 VVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLVKM 383


>AT1G55250.1 | Symbols: HUB2 | histone mono-ubiquitination 2 |
           chr1:20607214-20612302 FORWARD LENGTH=900
          Length = 900

 Score =  243 bits (619), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/343 (40%), Positives = 206/343 (60%), Gaps = 13/343 (3%)

Query: 22  RETIDSRDVMEARDAEYRAWAHVQSLKSSLDEHNLELRVKMANEAEARSQQNLAAAEAEI 81
           RE  D R + E +D++ +A A  + LK+ LDEH LELRVK A+E E+  Q+ LA A+AEI
Sbjct: 565 RECNDDRGLAEIKDSQRKAQAQAEELKNVLDEHFLELRVKAAHETESACQERLATAKAEI 624

Query: 82  ADMRKKLEDSKREMLKLSDVLRSKNEENEAFLSEIETIGQAYDDMQTQNQHLLQQITERD 141
           A++R +L+ S+RE+L+L + ++ K +E EA ++E+ETIGQAY+DMQTQNQHLLQQ+ ERD
Sbjct: 625 AELRTQLDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERD 684

Query: 142 DYNIKLVLEGVRARQKQDSLIMEKRVIEQEIHQANVSLNLYDVKAARIEDQLRHFSDQIQ 201
           DYNIKLV E V+ +   ++ + EK+V+E+++HQ N S+  +  + A  E+Q++    +  
Sbjct: 685 DYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAY 744

Query: 202 KLTEDKLQNSVTFENTQRRLADIRSSTQQVRDTVVEQQCKISSSRVTYMELQXXXXXXXX 261
           KL ++     ++ E T+  +AD     + ++  V       SSS   Y ++         
Sbjct: 745 KLIQEDRHLVISLETTKWEVADADKEFRWLKSAV-------SSSEKEYEQISRRTDDIKL 797

Query: 262 XXXXXXXXXXVARRKFSRLKVQNE--GSSLTE----KLQQELGEYKEIIKCSICQDRTKE 315
                         +   L  + E  GS   E    +LQ+E+   K I+KC +C DR KE
Sbjct: 798 ELDDERREKKKLEEELMELNKELEELGSESVEAAIVRLQEEVKNCKNILKCGVCFDRPKE 857

Query: 316 VVITKCYHLFCNTCMLKVTGSRHRKCPQCGTSFGANDVKPVYL 358
           VVI KCYHLFC  C+ +    RHRKCP CGT+FG NDV+ V +
Sbjct: 858 VVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLVKM 900


>AT1G55250.4 | Symbols: HUB2 | histone mono-ubiquitination 2 |
           chr1:20610166-20612302 FORWARD LENGTH=397
          Length = 397

 Score =  234 bits (597), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 206/357 (57%), Gaps = 27/357 (7%)

Query: 22  RETIDSRDVMEARDAEYRAWAHVQSLKSSLDEHNLELRVKMANEAEARSQQNLAAAEAEI 81
           RE  D R + E +D++ +A A  + LK+ LDEH LELRVK A+E E+  Q+ LA A+AEI
Sbjct: 48  RECNDDRGLAEIKDSQRKAQAQAEELKNVLDEHFLELRVKAAHETESACQERLATAKAEI 107

Query: 82  ADMRKKLEDSKREMLKLSDVLRSKNEENEAFLSEIETIGQAYDDMQTQNQHLLQQITERD 141
           A++R +L+ S+RE+L+L + ++ K +E EA ++E+ETIGQAY+DMQTQNQHLLQQ+ ERD
Sbjct: 108 AELRTQLDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERD 167

Query: 142 DYNIKLVLEGVRARQKQDSLIMEKRVIEQEIHQANVSLNLYDVKAARIEDQLRHFSDQIQ 201
           DYNIKLV E V+ +   ++ + EK+V+E+++HQ N S+  +  + A  E+Q++    +  
Sbjct: 168 DYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAY 227

Query: 202 KLTEDKLQNSVTFENTQRRLADIRSSTQQVRDTVVEQQCKISSSRVTYMELQXXXXXXXX 261
           KL ++     ++ E T+  +AD     + ++  V       SSS   Y ++         
Sbjct: 228 KLIQEDRHLVISLETTKWEVADADKEFRWLKSAV-------SSSEKEYEQISRRTDDIKL 280

Query: 262 XXXXXXXXXXVARRKFSRLKVQNE--GSSLTE----KLQQELGEYKEIIKCSICQDRTKE 315
                         +   L  + E  GS   E    +LQ+E+   K I+KC +C DR KE
Sbjct: 281 ELDDERREKKKLEEELMELNKELEELGSESVEAAIVRLQEEVKNCKNILKCGVCFDRPKE 340

Query: 316 --------------VVITKCYHLFCNTCMLKVTGSRHRKCPQCGTSFGANDVKPVYL 358
                         VVI KCYHLFC  C+ +    RHRKCP CGT+FG NDV+ V +
Sbjct: 341 RISTTAFCFKHYLQVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLVKM 397


>AT1G55250.3 | Symbols: HUB2 | histone mono-ubiquitination 2 |
           chr1:20607214-20612302 FORWARD LENGTH=899
          Length = 899

 Score =  233 bits (594), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 139/357 (38%), Positives = 206/357 (57%), Gaps = 27/357 (7%)

Query: 22  RETIDSRDVMEARDAEYRAWAHVQSLKSSLDEHNLELRVKMANEAEARSQQNLAAAEAEI 81
           RE  D R + E +D++ +A A  + LK+ LDEH LELRVK A+E E+  Q+ LA A+AEI
Sbjct: 550 RECNDDRGLAEIKDSQRKAQAQAEELKNVLDEHFLELRVKAAHETESACQERLATAKAEI 609

Query: 82  ADMRKKLEDSKREMLKLSDVLRSKNEENEAFLSEIETIGQAYDDMQTQNQHLLQQITERD 141
           A++R +L+ S+RE+L+L + ++ K +E EA ++E+ETIGQAY+DMQTQNQHLLQQ+ ERD
Sbjct: 610 AELRTQLDLSEREVLELKEGIKVKEQEAEASIAEMETIGQAYEDMQTQNQHLLQQVAERD 669

Query: 142 DYNIKLVLEGVRARQKQDSLIMEKRVIEQEIHQANVSLNLYDVKAARIEDQLRHFSDQIQ 201
           DYNIKLV E V+ +   ++ + EK+V+E+++HQ N S+  +  + A  E+Q++    +  
Sbjct: 670 DYNIKLVSESVKTKHAYNTHLSEKQVMEKQLHQVNASVENFKARIAHNEEQMKGCFSEAY 729

Query: 202 KLTEDKLQNSVTFENTQRRLADIRSSTQQVRDTVVEQQCKISSSRVTYMELQXXXXXXXX 261
           KL ++     ++ E T+  +AD     + ++  V       SSS   Y ++         
Sbjct: 730 KLIQEDRHLVISLETTKWEVADADKEFRWLKSAV-------SSSEKEYEQISRRTDDIKL 782

Query: 262 XXXXXXXXXXVARRKFSRLKVQNE--GSSLTE----KLQQELGEYKEIIKCSICQDRTKE 315
                         +   L  + E  GS   E    +LQ+E+   K I+KC +C DR KE
Sbjct: 783 ELDDERREKKKLEEELMELNKELEELGSESVEAAIVRLQEEVKNCKNILKCGVCFDRPKE 842

Query: 316 --------------VVITKCYHLFCNTCMLKVTGSRHRKCPQCGTSFGANDVKPVYL 358
                         VVI KCYHLFC  C+ +    RHRKCP CGT+FG NDV+ V +
Sbjct: 843 RISTTAFCFKHYLQVVIVKCYHLFCQQCIQRSLEIRHRKCPGCGTAFGQNDVRLVKM 899


>AT2G42030.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:17539069-17540346 REVERSE LENGTH=425
          Length = 425

 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 293 LQQELGEYKEIIKCSICQDRTKEVVITKCYHLFCNTCM---LKVTGSRHRKCPQCGTSFG 349
           +++ +G       C IC D +K+ V+T C HL+C +C+   L+V  S  ++CP C     
Sbjct: 128 VEKSVGSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQV--SEAKECPVCKGEVS 185

Query: 350 ANDVKPVY 357
              V P+Y
Sbjct: 186 VKTVTPIY 193