Miyakogusa Predicted Gene

Lj0g3v0320459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0320459.1 Non Chatacterized Hit- tr|I3SV88|I3SV88_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,58.49,0.000000001, ,CUFF.21717.1
         (53 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12500.1 | Symbols:  | Nucleotide-sugar transporter family pr...    63   5e-11
AT5G05820.1 | Symbols:  | Nucleotide-sugar transporter family pr...    47   3e-06
AT3G11320.1 | Symbols:  | Nucleotide-sugar transporter family pr...    46   5e-06

>AT1G12500.1 | Symbols:  | Nucleotide-sugar transporter family
           protein | chr1:4263542-4264957 REVERSE LENGTH=361
          Length = 361

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query: 1   MVQAIIMMTELDKFSSMNLLLYMALMATMILFSSTFYIEGNLVSVTFEKTRSD 53
           +VQ II+ +E +K  SMNLLLYMA MA  IL   T YIEGN++ V  EK R+D
Sbjct: 222 VVQGIILTSESEKLHSMNLLLYMAPMAACILLPFTLYIEGNVLRVLIEKARTD 274


>AT5G05820.1 | Symbols:  | Nucleotide-sugar transporter family
           protein | chr5:1752106-1753857 REVERSE LENGTH=309
          Length = 309

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 36/53 (67%)

Query: 1   MVQAIIMMTELDKFSSMNLLLYMALMATMILFSSTFYIEGNLVSVTFEKTRSD 53
           ++Q I++ +E +K +SMNLLLYMA +A ++L  +T  +E N+V +T    R D
Sbjct: 174 VLQGILLSSEGEKLNSMNLLLYMAPIAVVLLLPATLIMEKNVVGITIALARDD 226


>AT3G11320.1 | Symbols:  | Nucleotide-sugar transporter family
           protein | chr3:3547017-3548539 REVERSE LENGTH=308
          Length = 308

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)

Query: 1   MVQAIIMMTELDKFSSMNLLLYMALMATMILFSSTFYIEGNLVSVTFEKTRSD 53
           ++Q I++ +E +K +SMNLLLYMA +A + L  +T  +E N+V +T    R D
Sbjct: 174 VLQGILLSSEGEKLNSMNLLLYMAPIAVVFLLPATLIMEKNVVGITIALARDD 226