Miyakogusa Predicted Gene

Lj0g3v0320179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0320179.1 Non Chatacterized Hit- tr|I3S7E3|I3S7E3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.05,0,COP9
SIGNALOSOME COMPLEX SUBUNIT 6,NULL; EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT F-RELATE,CUFF.21698.1
         (317 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A | chr...   507   e-144
AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B | chr...   495   e-140
AT5G05780.2 | Symbols: RPN8A | RP non-ATPase subunit 8A | chr5:1...    90   3e-18
AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subu...    89   5e-18
AT3G11270.2 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein | ...    87   1e-17
AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein | ...    86   3e-17

>AT5G56280.1 | Symbols: CSN6A | COP9 signalosome subunit 6A |
           chr5:22783617-22785530 REVERSE LENGTH=317
          Length = 317

 Score =  507 bits (1306), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/317 (77%), Positives = 271/317 (85%)

Query: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYG 60
           MA SSSSGLTFKLHPLVIVNISDHYTRVK+Q+NP  +   S   +     +    PRVYG
Sbjct: 1   MAPSSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYG 60

Query: 61  CVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAE 120
           CVIGVQ+GRTVEIFNSFELLYDPST +LDR FLEKKQELYKKVFP FYILGWYSTGSDAE
Sbjct: 61  CVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAE 120

Query: 121 ESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTI 180
           ESDM+IH+ALMDINESPVYVLLNP+INH+QKDLPV+I+ESELHVIDGIPQLIF  +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTI 180

Query: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGD 240
           ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKML+SRI+VL+  L AMQKGD
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGD 240

Query: 241 VPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDKF 300
             C+N             PA+ES +FQD+FLM YND LLI+YL M+TNCSS MNE+VDKF
Sbjct: 241 KSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKF 300

Query: 301 NTAYDRHSRRGGRTAFM 317
           NTAYDR++RRGGRTAFM
Sbjct: 301 NTAYDRNTRRGGRTAFM 317


>AT4G26430.1 | Symbols: CSN6B | COP9 signalosome subunit 6B |
           chr4:13355229-13357326 FORWARD LENGTH=317
          Length = 317

 Score =  495 bits (1275), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/318 (74%), Positives = 272/318 (85%), Gaps = 2/318 (0%)

Query: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAP-HNSVPSNGADGVVSSVPPRVY 59
           MA SSSSGLTFKLHPLV++NISDH+TRVK+Q+NP  A       SN AD ++    PRVY
Sbjct: 1   MAPSSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQ-NPRVY 59

Query: 60  GCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDA 119
           GCVIG+Q+GRTVEIFNSFEL++DP+  +LDR FLEKKQELYKKVFP FY+LGWYSTGSDA
Sbjct: 60  GCVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDA 119

Query: 120 EESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYT 179
            ESDM+IH+ALMDINESPVYVLLNP+INH+QKDLPV+I+ESE HVIDGIPQ IFV +SYT
Sbjct: 120 TESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYT 179

Query: 180 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKG 239
           IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKML+SRI+VL+ +++AMQKG
Sbjct: 180 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKG 239

Query: 240 DVPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDK 299
           D PCEN             PA ES KF ++FLM YND LL+SYL M+TNC+S MNE+VDK
Sbjct: 240 DKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDK 299

Query: 300 FNTAYDRHSRRGGRTAFM 317
           FNTAYD+HSRRGGRTAFM
Sbjct: 300 FNTAYDKHSRRGGRTAFM 317


>AT5G05780.2 | Symbols: RPN8A | RP non-ATPase subunit 8A |
           chr5:1735862-1738176 FORWARD LENGTH=305
          Length = 305

 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 131/292 (44%), Gaps = 34/292 (11%)

Query: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIGVQKGRTVE 72
           +HPLV+++I DHY RV    +                       RV G ++G      V+
Sbjct: 19  VHPLVLLSIVDHYNRVAKDSSK----------------------RVVGVLLGSSSRGVVD 56

Query: 73  IFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIH 127
           + NS+ + +     DPS   LD  + E    ++K++    +++GWYSTG    E+D+++H
Sbjct: 57  VTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVH 116

Query: 128 RALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAER 187
                   +PV V+++  +   +  +P   + +         Q +FV  S  I   E E 
Sbjct: 117 ALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEENATQKSQKVFVHVSTEIAAHEVEE 174

Query: 188 ISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENX 246
           I V+H+   +K +   + AT++ A LT    A+K L +R++ +  YL  + +G +P  + 
Sbjct: 175 IGVEHLLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRSYLDLVIEGKLPLNHE 230

Query: 247 XXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVD 298
                       P +   +    F +  ND +L+ YL+ L     A++ L++
Sbjct: 231 ILYHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN 282


>AT5G05780.1 | Symbols: RPN8A, AE3, ATHMOV34 | RP non-ATPase subunit
           8A | chr5:1735862-1738176 FORWARD LENGTH=308
          Length = 308

 Score = 88.6 bits (218), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 133/295 (45%), Gaps = 37/295 (12%)

Query: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIGVQKGRTVE 72
           +HPLV+++I DHY RV    +                       RV G ++G      V+
Sbjct: 19  VHPLVLLSIVDHYNRVAKDSSK----------------------RVVGVLLGSSSRGVVD 56

Query: 73  IFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIH 127
           + NS+ + +     DPS   LD  + E    ++K++    +++GWYSTG    E+D+++H
Sbjct: 57  VTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVH 116

Query: 128 RALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIP---QLIFVRSSYTIETVE 184
                   +PV V+++  +   +  +P   + +   V +      Q +FV  S  I   E
Sbjct: 117 ALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHE 174

Query: 185 AERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPC 243
            E I V+H+   +K +   + AT++ A LT    A+K L +R++ +  YL  + +G +P 
Sbjct: 175 VEEIGVEHLLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRSYLDLVIEGKLPL 230

Query: 244 ENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVD 298
            +             P +   +    F +  ND +L+ YL+ L     A++ L++
Sbjct: 231 NHEILYHLQDVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN 285


>AT3G11270.2 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |
           chr3:3528989-3531317 FORWARD LENGTH=307
          Length = 307

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 130/292 (44%), Gaps = 34/292 (11%)

Query: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIGVQKGRTVE 72
           +HPLV+++I DHY RV    +                       RV G ++G     TV+
Sbjct: 19  VHPLVLLSIVDHYNRVAKDTSK----------------------RVVGVLLGSSSRGTVD 56

Query: 73  IFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIH 127
           + NS+ + +     D S   LD  + E    ++K++    +I+GWYSTG    E+D+++H
Sbjct: 57  VTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVH 116

Query: 128 RALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAER 187
                   +PV V+++  +   +  +P   + +         Q +FV     I   E E 
Sbjct: 117 ALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEENATQKSQQVFVHVPTEIAAHEVEE 174

Query: 188 ISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENX 246
           I V+H+   +K +   + AT++ A LT    A+K L +R++ +  YL  + +G +P  + 
Sbjct: 175 IGVEHLLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRTYLDLVIEGKLPLNHE 230

Query: 247 XXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVD 298
                       P +   +    F +  ND +L+ YL+ L     A++ L++
Sbjct: 231 ILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLIN 282


>AT3G11270.1 | Symbols: MEE34 | Mov34/MPN/PAD-1 family protein |
           chr3:3528989-3531317 FORWARD LENGTH=310
          Length = 310

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 132/295 (44%), Gaps = 37/295 (12%)

Query: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIGVQKGRTVE 72
           +HPLV+++I DHY RV    +                       RV G ++G     TV+
Sbjct: 19  VHPLVLLSIVDHYNRVAKDTSK----------------------RVVGVLLGSSSRGTVD 56

Query: 73  IFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIH 127
           + NS+ + +     D S   LD  + E    ++K++    +I+GWYSTG    E+D+++H
Sbjct: 57  VTNSYAVPFEEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVH 116

Query: 128 RALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIP---QLIFVRSSYTIETVE 184
                   +PV V+++  +   +  +P   + +   V +      Q +FV     I   E
Sbjct: 117 ALFNGYVPNPVLVIID--VQPKELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHE 174

Query: 185 AERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPC 243
            E I V+H+   +K +   + AT++ A LT    A+K L +R++ +  YL  + +G +P 
Sbjct: 175 VEEIGVEHLLRDVKDTTISTLATEVTAKLT----ALKGLDARLREIRTYLDLVIEGKLPL 230

Query: 244 ENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVD 298
            +             P +   +    F +  ND +L+ YL+ L     A++ L++
Sbjct: 231 NHEILYHLQDVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLIN 285