Miyakogusa Predicted Gene

Lj0g3v0319629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319629.1 tr|A9SAQ5|A9SAQ5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_163856,53.77,6e-19,UBIQUITIN_2,Ubiquitin supergroup;
Ubiquitin-like,NULL; no description,NULL; Rad60-SLD,Small
ubiquiti,CUFF.21656.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiq...   108   5e-25
AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small ubiq...   104   1e-23
AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small ubiq...   102   5e-23
AT5G55856.1 | Symbols:  | Ubiquitin-like superfamily protein | c...    80   2e-16
AT5G48710.1 | Symbols:  | Ubiquitin-like superfamily protein | c...    71   2e-13
AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small ubiq...    66   5e-12
AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | small ubiquitinrel...    62   9e-11
AT5G48700.1 | Symbols:  | Ubiquitin-like superfamily protein | c...    54   2e-08

>AT5G55160.1 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small
           ubiquitin-like modifier 2 | chr5:22383747-22384772
           REVERSE LENGTH=103
          Length = 103

 Score =  108 bits (271), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 71/96 (73%), Gaps = 4/96 (4%)

Query: 12  SQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSI 71
           S   +++KKP  +QG+ HIN+KV G Q+  E  FRIKR+ QL+ LMN YCD  S DFNSI
Sbjct: 2   SATPEEDKKP--DQGA-HINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSI 57

Query: 72  AFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
           AFL++G  + A QTPDEL+MED DEIDAM HQ GGG
Sbjct: 58  AFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 93


>AT4G26840.1 | Symbols: SUM1, SUMO 1, SUMO1, ATSUMO1 | small
           ubiquitin-like modifier 1 | chr4:13497466-13498458
           FORWARD LENGTH=100
          Length = 100

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 66/92 (71%), Gaps = 3/92 (3%)

Query: 12  SQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSI 71
           S +Q+++KKP    G +HIN+KV G Q+  E  FRIKR+ QL+ LMN YCD  S D NSI
Sbjct: 2   SANQEEDKKPG--DGGAHINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSI 58

Query: 72  AFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQ 103
           AFL++G  + A QTPDEL MED DEIDAM HQ
Sbjct: 59  AFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQ 90


>AT5G55160.2 | Symbols: SUM2, SUMO 2, SUMO2, ATSUMO2 | small
           ubiquitin-like modifier 2 | chr5:22383747-22384772
           REVERSE LENGTH=116
          Length = 116

 Score =  102 bits (255), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/108 (52%), Positives = 70/108 (64%), Gaps = 15/108 (13%)

Query: 12  SQDQDQEKKPATNQGSSHINIKVNGVQEKI------------EARFRIKRNVQLRTLMNL 59
           S   +++KKP  +QG+ HIN+KV G    +            E  FRIKR+ QL+ LMN 
Sbjct: 2   SATPEEDKKP--DQGA-HINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLMNA 58

Query: 60  YCDHYSQDFNSIAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
           YCD  S DFNSIAFL++G  + A QTPDEL+MED DEIDAM HQ GGG
Sbjct: 59  YCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 106


>AT5G55856.1 | Symbols:  | Ubiquitin-like superfamily protein |
           chr5:22607927-22608640 FORWARD LENGTH=97
          Length = 97

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 59/89 (66%), Gaps = 3/89 (3%)

Query: 18  EKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYEG 77
           +KKP     SSHI +KV   Q+ I   FRIKR+V+LR +M+ Y D    + +++ FL++G
Sbjct: 5   DKKPLI--PSSHITVKVKN-QDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDG 61

Query: 78  NLVSAYQTPDELKMEDEDEIDAMSHQMGG 106
           N +   QTP+EL +EDEDEI+A   Q+GG
Sbjct: 62  NRIKLNQTPNELGLEDEDEIEAFGEQLGG 90


>AT5G48710.1 | Symbols:  | Ubiquitin-like superfamily protein |
           chr5:19755065-19755572 REVERSE LENGTH=114
          Length = 114

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 60/106 (56%), Gaps = 2/106 (1%)

Query: 1   MSAASASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLY 60
           MS  S  G    + + Q++K  ++   +H+ +KV G  E+    F ++RN +L  +M LY
Sbjct: 1   MSTTSRVGSNEVKMEGQKRKVVSD--PTHVTLKVKGQDEEDFRVFWVRRNAKLLKMMELY 58

Query: 61  CDHYSQDFNSIAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGG 106
                 ++N+  FL++G+ +  Y TPDEL+ +D DEIDAM  Q  G
Sbjct: 59  TKMRGIEWNTFRFLFDGSRIREYHTPDELERKDGDEIDAMLCQQSG 104


>AT5G55170.1 | Symbols: SUM3, SUMO 3, SUMO3, ATSUMO3 | small
           ubiquitin-like modifier 3 | chr5:22385468-22386071
           REVERSE LENGTH=111
          Length = 111

 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)

Query: 17  QEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYE 76
           Q+ KP   +  +H+ +KV   Q+  E  F+ K++  L+ LM +YCD      ++ AF++ 
Sbjct: 5   QDDKPIDQEQEAHVILKVKS-QDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFN 63

Query: 77  GNLVSAYQTPDELKMEDEDEIDAMSHQMGG 106
           G  +   +TPDEL MED D IDA     GG
Sbjct: 64  GARIGGLETPDELDMEDGDVIDACRAMSGG 93


>AT2G32765.1 | Symbols: SUM5, SUMO5, ATSUMO5 | small
           ubiquitinrelated modifier 5 | chr2:13894968-13895399
           FORWARD LENGTH=108
          Length = 108

 Score = 61.6 bits (148), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 19  KKPATNQGSSH--INIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLYE 76
           KK  + + S H  + +KV   Q+  E  ++I  +  L+ LM+ YC   + D++S+ F+Y 
Sbjct: 15  KKSRSPETSPHMKVTLKVKN-QQGAEDLYKIGTHAHLKKLMSAYCTKRNLDYSSVRFVYN 73

Query: 77  GNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
           G  + A QTP +L ME+EDEI  M  ++GGG
Sbjct: 74  GREIKARQTPAQLHMEEEDEI-CMVMELGGG 103


>AT5G48700.1 | Symbols:  | Ubiquitin-like superfamily protein |
           chr5:19749494-19750013 REVERSE LENGTH=117
          Length = 117

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)

Query: 1   MSAASASGE-RGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNL 59
           MS  S+S   R     + EK+      S+H+ + V G  E+    FR++R  +L  LM  
Sbjct: 1   MSTKSSSIHGRNEVKMEGEKRKDVESESTHVTLNVKGQDEEGVKVFRVRRKARLLKLMEY 60

Query: 60  YCDHYSQDFNSIAFLY-EGNLVSAYQTPDELKMEDEDEIDAMSHQMGG 106
           Y      ++N+  FL  +G+ +  Y T D+++++D D+IDA+  Q  G
Sbjct: 61  YAKMRGIEWNTFRFLSDDGSRIREYHTADDMELKDGDQIDALLPQESG 108