Miyakogusa Predicted Gene

Lj0g3v0319359.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319359.1 Non Chatacterized Hit- tr|K3XLM0|K3XLM0_SETIT
Uncharacterized protein OS=Setaria italica GN=Si002793,32.35,3e-19,no
description,Trigger factor, ribosome-binding, bacterial;
Trigger_N,Trigger factor, ribosome-bindi,CUFF.21642.1
         (202 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30695.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   137   6e-33
AT2G30695.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   137   6e-33

>AT2G30695.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: protein folding, protein transport; LOCATED
           IN: chloroplast; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
           DOMAIN/s: Trigger factor, ribosome-binding, bacterial
           (InterPro:IPR008881); Has 35333 Blast hits to 34131
           proteins in 2444 species: Archae - 798; Bacteria -
           22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
           - 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
           chr2:13079269-13081095 REVERSE LENGTH=199
          Length = 199

 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 89/119 (74%), Gaps = 1/119 (0%)

Query: 59  AAVISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
            A  SD   SS D E   ++  +     E+K+ ++VSG KTQ++F+ VF KMVAAAQPIP
Sbjct: 55  CAAPSDVETSSKD-ESVLITKVETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIP 113

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQ 177
           GFRRVKGGKTP+IPK++LLE+LG SKVYK+VIKK+INS + +YV++E L VG +L V Q
Sbjct: 114 GFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKVGKELTVVQ 172


>AT2G30695.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: protein folding, protein transport; LOCATED
           IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23
           plant structures; EXPRESSED DURING: 13 growth stages;
           CONTAINS InterPro DOMAIN/s: Trigger factor,
           ribosome-binding, bacterial (InterPro:IPR008881); Has
           253 Blast hits to 253 proteins in 72 species: Archae -
           0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 40;
           Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
           | chr2:13079269-13081095 REVERSE LENGTH=199
          Length = 199

 Score =  137 bits (344), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 68/119 (57%), Positives = 89/119 (74%), Gaps = 1/119 (0%)

Query: 59  AAVISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
            A  SD   SS D E   ++  +     E+K+ ++VSG KTQ++F+ VF KMVAAAQPIP
Sbjct: 55  CAAPSDVETSSKD-ESVLITKVETETSNEVKVHVQVSGEKTQTVFNHVFEKMVAAAQPIP 113

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQ 177
           GFRRVKGGKTP+IPK++LLE+LG SKVYK+VIKK+INS + +YV++E L VG +L V Q
Sbjct: 114 GFRRVKGGKTPNIPKDVLLEILGYSKVYKQVIKKLINSAIEDYVKQEDLKVGKELTVVQ 172