Miyakogusa Predicted Gene

Lj0g3v0319339.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319339.1 CUFF.21631.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19770.1 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting p...   251   5e-67
AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9)...   238   4e-63
AT3G19770.2 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting p...   184   7e-47

>AT3G19770.1 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting
           protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD
           LENGTH=520
          Length = 520

 Score =  251 bits (641), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 142/328 (43%), Positives = 206/328 (62%), Gaps = 57/328 (17%)

Query: 2   EGLEKYILTKLFARTFAASPEDAKIDNEISEKICLLQTFLKPEHLDIPPILRNEASWLLA 61
           +GLEKY++TKLF R FA++ E+   D ++ +K+ L+Q F+ PE+LDI P  +NE+SWLLA
Sbjct: 80  DGLEKYVMTKLFTRVFASNTEEVIADEKLFQKMSLVQQFISPENLDIQPTFQNESSWLLA 139

Query: 62  EKELQKINAFKAPQEKLLSIMNCCRVINNLLLNAAMS--EHVPAGADDFLPVLIYVTIKA 119
           +KELQKIN +KAP++KL+ I+NCC+VINNLLLNA+++  E+ P GAD+FLPVLIYVTIKA
Sbjct: 140 QKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAP-GADEFLPVLIYVTIKA 198

Query: 120 NPPMLHSNLKFIKLYRRQAKLISEAEYYFTNLVSAKTFIADLNAKSLTMDEIIFEESMQA 179
           NPP LHSNL +I+ YRR++KL+ EA Y+FTN++SA++FI++++AKS+++DE  FE++M++
Sbjct: 199 NPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEKNMES 258

Query: 180 ARLTSRVSSVKPSTCQASQQG----KNDGSFSKKMHL--KRDDTGVFQV----------- 222
           AR  +R+S +   T Q         +++ +  K   L  KR++T +FQ            
Sbjct: 259 AR--ARISGLDSQTYQTGHGSAPPPRDESTLQKTQSLNPKRENT-LFQSKSSDSLSGTNE 315

Query: 223 ---LQHET-----------------------------NYPYTEAKGEELAVEDVDILLNC 250
              +  ET                              YPY  A   +L + DV+ LLN 
Sbjct: 316 LLNINSETPMKKAESISDLENKGATLLKDTEPSKVFQEYPYIFASAGDLRIGDVEGLLNS 375

Query: 251 YKDLVSNYTILCKAI-DCLSV-PEKEPL 276
           YK LV  Y  L K + D  S+ P   PL
Sbjct: 376 YKQLVFKYVCLTKGLGDGTSLAPSSSPL 403


>AT5G09320.1 | Symbols: VPS9B | Vacuolar sorting protein 9 (VPS9)
           domain | chr5:2889007-2892016 REVERSE LENGTH=712
          Length = 712

 Score =  238 bits (607), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 146/347 (42%), Positives = 204/347 (58%), Gaps = 49/347 (14%)

Query: 2   EGLEKYILTKLFARTFAASPEDAKIDNEISEKICLLQTFLKPEHLDIPPILRNEASWLLA 61
           +GLEKY++TKLF R FA++ ED   D ++ +KI L+Q F+ PE+LDI P  +N+ SWLLA
Sbjct: 77  DGLEKYVMTKLFPRVFASNTEDVISDEKLFQKISLVQQFISPENLDIQPTFQNQTSWLLA 136

Query: 62  EKELQKINAFKAPQEKLLSIMNCCRVINNLLLNAAM-SEHVPAGADDFLPVLIYVTIKAN 120
           +KELQKIN + AP++KL+ I+ CC+VINNLLLNA++ S     GAD FLPVLIYVTIKAN
Sbjct: 137 QKELQKINMYNAPRDKLMCILRCCKVINNLLLNASIASNQNEPGADQFLPVLIYVTIKAN 196

Query: 121 PPMLHSNLKFIKLYRRQAKLISEAEYYFTNLVSAKTFIADLNAKSLTMDEIIFEESMQAA 180
           PP  HSNL +I+ YRRQ+KL+ EA Y FTN++SA++FI++++AKSL+MDE  FE  M++A
Sbjct: 197 PPQFHSNLLYIQRYRRQSKLVGEAGYLFTNILSAESFISNIDAKSLSMDEADFETKMKSA 256

Query: 181 RLTSRVSSVKPSTCQASQQG-----------------KNDGSFS------KKMHLKRDD- 216
              +R+S     + Q                      K+  SFS       +  +K+ D 
Sbjct: 257 H--ARLSGPGSQSYQTDHGAALPTAHNTKRENMLLHTKSTDSFSGTNETLSETPIKKADP 314

Query: 217 ------TGVFQVLQHET-------NYPYTEAKGEELAVEDVDILLNCYKDLVSNYTILCK 263
                  G   +L   +        YPY  A   +L + DV+ LLN YK LV  Y  L K
Sbjct: 315 ITDLENKGAATLLNDRSEATKIFQEYPYMFASVGDLKIGDVEDLLNNYKQLVFKYVCLSK 374

Query: 264 AI-DCLSVPEKEPLLHHLEMQGAGSLFSQHNKINTNTNDQTISETPR 309
            + D  S+    P +  L+   A  +   H  ++++   QT SET R
Sbjct: 375 GLGDATSLT---PCISPLQ---ASKVSENHTTLSSDF--QTKSETDR 413


>AT3G19770.2 | Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting
           protein 9 (VPS9) domain | chr3:6867742-6869114 FORWARD
           LENGTH=384
          Length = 384

 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 112/271 (41%), Positives = 162/271 (59%), Gaps = 57/271 (21%)

Query: 59  LLAEKELQKINAFKAPQEKLLSIMNCCRVINNLLLNAAMS--EHVPAGADDFLPVLIYVT 116
           + A+KELQKIN +KAP++KL+ I+NCC+VINNLLLNA+++  E+ P GAD+FLPVLIYVT
Sbjct: 1   MAAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENAP-GADEFLPVLIYVT 59

Query: 117 IKANPPMLHSNLKFIKLYRRQAKLISEAEYYFTNLVSAKTFIADLNAKSLTMDEIIFEES 176
           IKANPP LHSNL +I+ YRR++KL+ EA Y+FTN++SA++FI++++AKS+++DE  FE++
Sbjct: 60  IKANPPQLHSNLLYIQRYRRESKLVGEAAYFFTNILSAESFISNIDAKSISLDEAEFEKN 119

Query: 177 MQAARLTSRVSSVKPSTCQASQQG----KNDGSFSKKMHL--KRDDTGVFQV-------- 222
           M++AR  +R+S +   T Q         +++ +  K   L  KR++T +FQ         
Sbjct: 120 MESAR--ARISGLDSQTYQTGHGSAPPPRDESTLQKTQSLNPKRENT-LFQSKSSDSLSG 176

Query: 223 ------LQHET-----------------------------NYPYTEAKGEELAVEDVDIL 247
                 +  ET                              YPY  A   +L + DV+ L
Sbjct: 177 TNELLNINSETPMKKAESISDLENKGATLLKDTEPSKVFQEYPYIFASAGDLRIGDVEGL 236

Query: 248 LNCYKDLVSNYTILCKAI-DCLSV-PEKEPL 276
           LN YK LV  Y  L K + D  S+ P   PL
Sbjct: 237 LNSYKQLVFKYVCLTKGLGDGTSLAPSSSPL 267