Miyakogusa Predicted Gene

Lj0g3v0319299.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319299.1 tr|A8HNS4|A8HNS4_CHLRE Peroxisomal targeting
signal 1 receptor OS=Chlamydomonas reinhardtii GN=PEX5
,30.61,0.0000000000001,seg,NULL,CUFF.21651.1
         (279 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56290.1 | Symbols: PEX5, ATPEX5 | peroxin 5 | chr5:22786655-...   304   5e-83

>AT5G56290.1 | Symbols: PEX5, ATPEX5 | peroxin 5 |
           chr5:22786655-22791972 FORWARD LENGTH=728
          Length = 728

 Score =  304 bits (778), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 157/281 (55%), Positives = 181/281 (64%), Gaps = 7/281 (2%)

Query: 1   MAMRDLITGATACPDPXXXXXXXNPLGALANVLVGSSSKTQERLKEIPTSTPTGPASQFY 60
           MAMRDL+ G  AC  P       NPLGAL N L+GSSSKTQERLKEIP +  +GP  QFY
Sbjct: 1   MAMRDLVNGGAACAVPGSSSSS-NPLGALTNALLGSSSKTQERLKEIPNANRSGPRPQFY 59

Query: 61  S--QPPLQLPGSEFDKPFLDSNSQGSAFLNSFRSAGAGGLEETWDEIQREGRVGQPYGRV 118
           S  Q    LPGSE D+P L   +QGS F   FRS    GL   WDE+Q+ G +       
Sbjct: 60  SEDQQIRSLPGSELDQPLLQPGAQGSEFFRGFRSVDQNGLGAAWDEVQQGGPMPPMGPMF 119

Query: 119 PPPQQLHQPALDGTPQRVXXXXXXXXXXXXRGGIPFHPAPLPMLGLSEGDKQCIRDRSSI 178
            P Q    P  +G PQRV            RGGIPF PAP+P+LGLS+ DKQCIRDRSSI
Sbjct: 120 EPVQ----PTFEGPPQRVLSNFLHSFVESSRGGIPFRPAPVPVLGLSQSDKQCIRDRSSI 175

Query: 179 MARHLFADKNEEFINAQVNALLCSLDIDSNVRGKGPMPERLRELEDYWNESQGNRRLGAH 238
           MARH FAD+ EEFIN+QVNALL SLDID  ++ +G +P R REL+DYWNESQ   +   H
Sbjct: 176 MARHFFADRGEEFINSQVNALLSSLDIDDGIQARGHVPGRFRELDDYWNESQAVVKPNLH 235

Query: 239 PADGWITEFSQNRERHDNPDSWANSFEQQHGANGWASEFEH 279
           PAD W  EF+Q+   H  PDSW  SFEQQHG NGWA+EFE 
Sbjct: 236 PADNWAAEFNQHGMDHGGPDSWVQSFEQQHGVNGWATEFEQ 276