Miyakogusa Predicted Gene

Lj0g3v0318859.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318859.1 Non Chatacterized Hit- tr|D8SUQ7|D8SUQ7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,37.2,1e-17,A_DEAMIN_EDITASE,Adenosine deaminase/editase; RNA
BINDING / ADENOSINE DEAMINASE,NULL; EUKARYOTE SPEC,CUFF.21593.1
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G01760.1 | Symbols:  | adenosine deaminases;RNA binding;RNA b...   201   2e-52

>AT1G01760.1 | Symbols:  | adenosine deaminases;RNA binding;RNA
           binding;adenosine deaminases | chr1:276412-278448
           REVERSE LENGTH=420
          Length = 420

 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 121/160 (75%)

Query: 5   FKFEDNLKRALYDHIRSMSNELTSPFLVSQPLFQAAPVPPKDFQQSESAANTLTCGYSIC 64
           F   D+L+R+LY+ I  +S+EL + F +++PLF  APVPP +FQ SE+A  TLTCGYS+C
Sbjct: 261 FSLADHLRRSLYERILPLSDELLTSFRLNKPLFFVAPVPPSEFQHSETAQATLTCGYSLC 320

Query: 65  WNGCGLHEVILGTTGRKQGTSAKGALYPSSESSLCKKRLLEVFLSLRQGCLTTCLEKGIT 124
           WN  GLHEVILGTTGRKQGTSAKGALYPS++SS+CK+RLLE+FL    G      +   +
Sbjct: 321 WNYSGLHEVILGTTGRKQGTSAKGALYPSTQSSICKQRLLELFLKETHGHKRESSKSKKS 380

Query: 125 YRELKDGAEEYHLASKFFKGKPPFSNWFLKPLDCETFPIS 164
           YRELK+ A EY+L SK FKGK PF+NW  KPL+CE F I+
Sbjct: 381 YRELKNKATEYYLMSKIFKGKYPFNNWLRKPLNCEDFLIN 420