Miyakogusa Predicted Gene

Lj0g3v0318709.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318709.1 Non Chatacterized Hit- tr|I1KS47|I1KS47_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56996
PE,82.91,0,seg,NULL; RIBOSOMAL_S19,Ribosomal protein S19 conserved
site; RIBOSOMALS19,Ribosomal protein S19/S15,CUFF.21575.1
         (125 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 | chr5:1920...   107   2e-24

>AT5G47320.1 | Symbols: RPS19 | ribosomal protein S19 |
           chr5:19203801-19204951 FORWARD LENGTH=212
          Length = 212

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/74 (74%), Positives = 62/74 (83%), Gaps = 5/74 (6%)

Query: 40  FIDAFLYKMKKNKDLLTNKTIWSRRSTILPEFVDTTVKIYNGKTTVRCKITEGKVGHKFG 99
           F+DAFL K KKN  L  N+ IWSRRSTILPE+VD+ V+IYNGKT VRCKITEGKVGHKFG
Sbjct: 141 FVDAFLMK-KKNAAL--NRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKITEGKVGHKFG 197

Query: 100 EFALTRKRKVKEHS 113
           EFA T  RKVK+H+
Sbjct: 198 EFAFT--RKVKKHA 209