Miyakogusa Predicted Gene

Lj0g3v0318559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318559.1 Non Chatacterized Hit- tr|I3SWD9|I3SWD9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,DYNEIN_LIGHT_1,Dynein light chain, type 1/2, conserved
site; no description,Dynein light chain, type,CUFF.21564.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15930.1 | Symbols:  | Dynein light chain type 1 family prote...   158   1e-39
AT5G20110.1 | Symbols:  | Dynein light chain type 1 family prote...    83   7e-17
AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    79   8e-16
AT3G16120.1 | Symbols:  | Dynein light chain type 1 family prote...    76   8e-15
AT1G23220.1 | Symbols:  | Dynein light chain type 1 family prote...    75   1e-14
AT4G27360.1 | Symbols:  | Dynein light chain type 1 family prote...    74   3e-14
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    47   3e-06

>AT4G15930.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:9036344-9037825 FORWARD LENGTH=123
          Length = 123

 Score =  158 bits (399), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 70/86 (81%), Positives = 81/86 (94%)

Query: 57  KKVIIKSADMLPDMQKEAVDIAVAAFERLNVEKDVAEHIKKEFDKRHGPTWHCIVGRNFG 116
           K+ +IKSADM  DMQKEA++IA++AFE+ +VEKD+AE+IKKEFDK+HG TWHCIVGRNFG
Sbjct: 38  KRAVIKSADMKDDMQKEAIEIAISAFEKYSVEKDIAENIKKEFDKKHGATWHCIVGRNFG 97

Query: 117 SYVTHETNHFVYFYLDQKAVLLFKSG 142
           SYVTHETNHFVYFYLDQKAVLLFKSG
Sbjct: 98  SYVTHETNHFVYFYLDQKAVLLFKSG 123


>AT5G20110.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr5:6791542-6793253 REVERSE LENGTH=209
          Length = 209

 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 2/85 (2%)

Query: 59  VIIKSADMLPDMQKEAVDIAVAAFERLN--VEKDVAEHIKKEFDKRHGPTWHCIVGRNFG 116
           V I +ADM   MQ  A   A    + L     K +A ++KKEFDK +GP WHCIVG +FG
Sbjct: 117 VRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHMAFNLKKEFDKGYGPAWHCIVGSSFG 176

Query: 117 SYVTHETNHFVYFYLDQKAVLLFKS 141
           S+VTH T  F+YF +D+  VLLFK+
Sbjct: 177 SFVTHSTGCFIYFSMDKLYVLLFKT 201


>AT1G52240.2 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
           guanyl-nucleotide exchange factor 11 |
           chr1:19458844-19459235 REVERSE LENGTH=94
          Length = 94

 Score = 79.3 bits (194), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLNV--EKDVAEHIKKEFDKRHGPTWHCIVGRNF 115
           K +++ +DM   MQ +A+  A  A +  +V   K +A HIKKEFD+R+G  W C+VG NF
Sbjct: 5   KAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVGSNF 64

Query: 116 GSYVTHETNHFVYFYLDQKAVLLFKS 141
           G + TH    F+YF L+    L+FK 
Sbjct: 65  GCFFTHSKGTFIYFQLETLKFLIFKG 90


>AT3G16120.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr3:5465035-5465395 FORWARD LENGTH=93
          Length = 93

 Score = 75.9 bits (185), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%)

Query: 61  IKSADMLPDMQKEAVDIAVAAFERLNV--EKDVAEHIKKEFDKRHGPTWHCIVGRNFGSY 118
           ++  DM   MQ +A+ IA  + +  +V     +A HIKKEFD+R+G  W C+VG NFG +
Sbjct: 8   VEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNFGCF 67

Query: 119 VTHETNHFVYFYLDQKAVLLFKS 141
            TH    F+YF+L     L+FK 
Sbjct: 68  FTHSKGTFIYFHLGTLNFLIFKG 90


>AT1G23220.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr1:8242614-8244136 FORWARD LENGTH=129
          Length = 129

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 9/90 (10%)

Query: 59  VIIKSADMLPDMQKEAVDIAVAAFERLNV------EKDVAEHIKKEFDKRHGPTWHCIVG 112
           V ++++DM    Q  A  ++    E LN        K +A  +KK+FD  +GP WHCIVG
Sbjct: 36  VRVRASDMPLPQQNRAFSLSR---EILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVG 92

Query: 113 RNFGSYVTHETNHFVYFYLDQKAVLLFKSG 142
            +FGSYVTH T  F+YF +D+  VLLFK+ 
Sbjct: 93  TSFGSYVTHSTGGFLYFQIDKVYVLLFKTA 122


>AT4G27360.1 | Symbols:  | Dynein light chain type 1 family protein
           | chr4:13694032-13694517 FORWARD LENGTH=103
          Length = 103

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLNVEK--DVAEHIKKEFDKRHGPTWHCIVGRNF 115
           K ++   DM   M+++A+ +A  A +  +V +   +A  IKKEFD+ +G  W CIVG +F
Sbjct: 5   KAVMGDTDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHF 64

Query: 116 GSYVTHETNHFVYFYLDQKAVLLFKS 141
           GS+VTH +  F++F +    +LLFK 
Sbjct: 65  GSFVTHCSGCFIHFSVGSLTILLFKG 90


>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
           guanyl-nucleotide exchange factor 11 |
           chr1:19455766-19459235 REVERSE LENGTH=607
          Length = 607

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 58  KVIIKSADMLPDMQKEAVDIAVAAFERLNV--EKDVAEHIKKEFDKRHGPTWHCI 110
           K +++ +DM   MQ +A+  A  A +  +V   K +A HIKKEFD+R+G  W C+
Sbjct: 5   KAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCV 59