Miyakogusa Predicted Gene

Lj0g3v0318429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318429.1 Non Chatacterized Hit- tr|D7M307|D7M307_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,63.38,3e-18,UNCHARACTERIZED,Vesicle transport protein,
SFT2-like; Got1,Vesicle transport protein,
Got1/SFT2-like,gene.g24779.t1.1
         (72 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23550.1 | Symbols:  | Got1/Sft2-like vescicle transport prot...   127   1e-30
AT5G24170.1 | Symbols:  | Got1/Sft2-like vescicle transport prot...    96   4e-21

>AT5G23550.1 | Symbols:  | Got1/Sft2-like vescicle transport protein
           family | chr5:7939914-7941479 REVERSE LENGTH=175
          Length = 175

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/72 (83%), Positives = 67/72 (93%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMV 60
           MMLDP RIYATA+Y+AS+IIALFCALYV NKLLTLLAIILEF  L+WYSLSYIPFAR+MV
Sbjct: 104 MMLDPARIYATALYLASIIIALFCALYVRNKLLTLLAIILEFTGLIWYSLSYIPFARTMV 163

Query: 61  SKIMVSCFDTEF 72
           SKI ++CFDTEF
Sbjct: 164 SKIFMTCFDTEF 175


>AT5G24170.1 | Symbols:  | Got1/Sft2-like vescicle transport protein
           family | chr5:8189744-8191355 REVERSE LENGTH=163
          Length = 163

 Score = 95.9 bits (237), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/71 (63%), Positives = 57/71 (80%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMV 60
           MM DPVR  AT+IYI  +++AL CAL +H+K+LT+LAI+ E  AL+WYSLSYIPFAR MV
Sbjct: 92  MMFDPVRFLATSIYIGCVVVALICALLIHSKILTVLAILCEICALIWYSLSYIPFARRMV 151

Query: 61  SKIMVSCFDTE 71
           S+IM+   DTE
Sbjct: 152 SEIMIRLCDTE 162