Miyakogusa Predicted Gene

Lj0g3v0318309.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318309.1 tr|G7L125|G7L125_MEDTR Regulation of nuclear
pre-mRNA domain-containing protein 1B OS=Medicago trunc,76.49,0,no
description,RNA polymerase II, large subunit, CTD; CID,RNA polymerase
II, large subunit, CTD; no ,CUFF.21626.1
         (513 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26990.1 | Symbols:  | ENTH/VHS family protein | chr3:9948426...   430   e-120
AT5G10060.1 | Symbols:  | ENTH/VHS family protein | chr5:3145994...   244   1e-64
AT5G65180.1 | Symbols:  | ENTH/VHS family protein | chr5:2604562...   239   4e-63
AT5G65180.2 | Symbols:  | ENTH/VHS family protein | chr5:2604647...    85   2e-16

>AT3G26990.1 | Symbols:  | ENTH/VHS family protein |
           chr3:9948426-9951557 REVERSE LENGTH=513
          Length = 513

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 260/549 (47%), Positives = 327/549 (59%), Gaps = 72/549 (13%)

Query: 1   MGSTFNAQILVDKLTKLNGSQASIETLSHWCIFHMNKAKQVVETWARQFHSSPREKRLAF 60
           MGS+FNAQILV+KL KLN SQASIETLSHWCIFHMNKAK VVETW RQFH +PRE+RLA+
Sbjct: 1   MGSSFNAQILVEKLAKLNNSQASIETLSHWCIFHMNKAKHVVETWGRQFHCAPREQRLAY 60

Query: 61  LYLANDILQNSRRKGSEFVGEFWKVLPGALRDVIENGDEFAKNAALRLIGIWEERKVFGS 120
           LYLANDILQNSRRKGSEFVGEFWKVLP ALRD+IENGD+F + +A RL+ IWEERKVFGS
Sbjct: 61  LYLANDILQNSRRKGSEFVGEFWKVLPDALRDMIENGDDFGRKSARRLVNIWEERKVFGS 120

Query: 121 RGQILKEGIVGKNVENNSRDAKPMNMKL----RPSAGDALEKIVSGYRVIYGGQTDEDAV 176
           RGQILKE ++G+  EN +R+   + +KL    R   G  LEK+VS   V++G Q DEDA+
Sbjct: 121 RGQILKEELLGRQPENGTRNGNLVPLKLSVPQRQVNGSTLEKVVSAVEVLHGVQIDEDAL 180

Query: 177 LSKCRNAISFLEKADKEIGHDSDSG---------KLQGHNATLKDCIERLTSIESSRASL 227
           + K  NA  +LEKA +E+  D  SG         +LQG +  L+DCIE+L ++E+SR SL
Sbjct: 181 VGKSTNAAGYLEKATQEVERDLSSGHAPGPAVVKELQGQHVILRDCIEQLGAMETSRTSL 240

Query: 228 VSHLREALQDQEFKLGQIRCQIQAARVQSEQAGG---QLLN-GNNVQP--ITEQSSKEI- 280
           +SHLREALQ+QE KL Q+R  +Q AR QS++ G    QLL+ G + QP    E+ SKE+ 
Sbjct: 241 ISHLREALQEQELKLEQVRNHLQIARFQSDRTGDLCRQLLDHGGSSQPPATEEEESKEVI 300

Query: 281 ---QTSMAPASFVSAGDREQSAPLMYAPQVSFAQNSGPNEEDPRXXXXXXXXXXXXXXXX 337
               T+ AP SF  + D EQSAP+M      FA N   + EDPR                
Sbjct: 301 KVSSTAAAPQSFTHS-DVEQSAPVM------FASNPTQSLEDPRKTAAAAVVAKLTASTS 353

Query: 338 XXQMLSYVLSSLASEGVIGN---PIRD---SSADYQPEKRAKLENDXXXXXXXXXXXXXX 391
             +MLSYVLSSLASEG+IGN   P      SS D+ PEKR KL+N               
Sbjct: 354 SAEMLSYVLSSLASEGIIGNNNPPAVTETLSSVDFPPEKRPKLQNHDQSYLSP------- 406

Query: 392 XXXXXXXXXILHNAASTTNQQSTPNEXXXXXXXXXXXXXXXXXMAQYPVPQYMQTSGSVN 451
                      H+  + T   STP +                 +            G VN
Sbjct: 407 -----------HHQNTATTSSSTPPQPLPPPPPFQLQPQFLQPLQ---------PPGPVN 446

Query: 452 NMTYSYSVIQQPSMAAF------PAVGPSLNNASSF-APPMNAYQGFQGPDGNYYNHPSS 504
           +  ++Y++    +          P V P L   S+  AP  N+YQ FQG DG +Y   SS
Sbjct: 447 HTPFNYTIATSTATTQQQQQEQGPWV-PGLTQLSTTSAPSENSYQKFQGQDG-FYGINSS 504

Query: 505 MPMTPISRQ 513
           +P+TP++RQ
Sbjct: 505 VPITPVTRQ 513


>AT5G10060.1 | Symbols:  | ENTH/VHS family protein |
           chr5:3145994-3148049 REVERSE LENGTH=469
          Length = 469

 Score =  244 bits (623), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/289 (42%), Positives = 186/289 (64%), Gaps = 36/289 (12%)

Query: 1   MGSTFNAQILVDKLTKLNGSQASIETLSHWCIFHMNKAKQVVETWARQFHSSPREKRLAF 60
           M S F+ QIL+DKL KLN SQ SIETLSHWCIF+ +KA+ +V TW +QFHS+  ++++  
Sbjct: 1   MSSVFSDQILIDKLAKLNSSQQSIETLSHWCIFNRSKAELIVTTWEKQFHSTEMDQKVPL 60

Query: 61  LYLANDILQNSRRKGSEFVGEFWKVLPGALRDVIENGDEFAKNAALRLIGIWEERKVFGS 120
           LYLANDILQNS+R+G+EFV EFW VLP AL+D++  GD+  K+A  R+I IWEER+VFGS
Sbjct: 61  LYLANDILQNSKRQGNEFVQEFWNVLPKALKDIVSQGDDNGKSAVARVIKIWEERRVFGS 120

Query: 121 RGQILKEGIVGKNVENNSRDAKPMNM-KLRP------------------SAGDALEKIVS 161
           R + LK+ ++G++V        P+++ K RP                  S+G   EKI S
Sbjct: 121 RSKSLKDVMLGEDV------PLPLDISKKRPRGSKSSKRESKSSRTKLASSGGVAEKIAS 174

Query: 162 GYRVIYGGQTDEDAVLSKCRNAISFLEKADKEIGHDSDSGKLQGHNATL----------- 210
            Y ++    ++E+A ++KC++A+  + K +K++     + K      +L           
Sbjct: 175 AYHLVVAENSNEEAEMNKCKSAVKRIRKMEKDVEEACSTAKDNPKRKSLAKELEEEEYLL 234

Query: 211 KDCIERLTSIESSRASLVSHLREALQDQEFKLGQIRCQIQAARVQSEQA 259
           + CIE+L S++ SR+SLV+ L++AL++QE +L  ++ QIQ A+ Q+E+A
Sbjct: 235 RQCIEKLKSVQGSRSSLVNQLKDALREQESELDNLKAQIQVAKEQTEEA 283


>AT5G65180.1 | Symbols:  | ENTH/VHS family protein |
           chr5:26045625-26047806 FORWARD LENGTH=439
          Length = 439

 Score =  239 bits (609), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 119/283 (42%), Positives = 181/283 (63%), Gaps = 26/283 (9%)

Query: 1   MGSTFNAQILVDKLTKLNGSQASIETLSHWCIFHMNKAKQVVETWARQFHSSPREKRLAF 60
           M S F+ +IL+D L KLN +Q SI+TLS WCI H ++A+ VV TW +QFHS+   +++  
Sbjct: 1   MSSPFSEEILIDNLAKLNSTQQSIQTLSQWCIVHRSEAELVVTTWEKQFHSTQIGQKVPL 60

Query: 61  LYLANDILQNSRRKGSEFVGEFWKVLPGALRDVIENGDEFAKNAALRLIGIWEERKVFGS 120
           LYLANDILQNS+R+G+EFV EFWKVLPGAL+D++  GD++ K    RL+ IWEER+VFGS
Sbjct: 61  LYLANDILQNSKRQGNEFVQEFWKVLPGALKDIVSLGDDYGKGVVSRLVNIWEERRVFGS 120

Query: 121 RGQILKEGIVGKNV--------------ENNSRDAKPMNMKLRPSAGDALEKIVSGYRVI 166
           R + LK+ ++ +                ++  RD+K    KL  S+G   EKIVS + ++
Sbjct: 121 RSKSLKDVMLSEEAPPPLDVSKKRFRGSKSAKRDSKSTKTKL--SSGGVSEKIVSAFNLV 178

Query: 167 YGGQTDEDAVLSKCRNAISFLEKADKEIGHDSDSGK----------LQGHNATLKDCIER 216
               ++E+  ++KC++A+  + K +K++     + K          L+     L+  +E+
Sbjct: 179 RAENSNEETEMNKCKSAVRRIRKMEKDVEDACSTAKDPRKESLAKELEEEENILRQSVEK 238

Query: 217 LTSIESSRASLVSHLREALQDQEFKLGQIRCQIQAARVQSEQA 259
           L S+E SR SLV+HLREAL++QE +L  ++ QIQ A+ Q+E+A
Sbjct: 239 LKSVEESRTSLVNHLREALREQESELENLQSQIQVAQEQTEEA 281


>AT5G65180.2 | Symbols:  | ENTH/VHS family protein |
           chr5:26046478-26047806 FORWARD LENGTH=311
          Length = 311

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 78/131 (59%), Gaps = 12/131 (9%)

Query: 139 RDAKPMNMKLRPSAGDALEKIVSGYRVIYGGQTDEDAVLSKCRNAISFLEKADKEIGHDS 198
           RD+K    KL  S+G   EKIVS + ++    ++E+  ++KC++A+  + K +K++    
Sbjct: 25  RDSKSTKTKL--SSGGVSEKIVSAFNLVRAENSNEETEMNKCKSAVRRIRKMEKDVEDAC 82

Query: 199 DSGK----------LQGHNATLKDCIERLTSIESSRASLVSHLREALQDQEFKLGQIRCQ 248
            + K          L+     L+  +E+L S+E SR SLV+HLREAL++QE +L  ++ Q
Sbjct: 83  STAKDPRKESLAKELEEEENILRQSVEKLKSVEESRTSLVNHLREALREQESELENLQSQ 142

Query: 249 IQAARVQSEQA 259
           IQ A+ Q+E+A
Sbjct: 143 IQVAQEQTEEA 153