Miyakogusa Predicted Gene

Lj0g3v0318179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318179.1 Non Chatacterized Hit- tr|K3XMI8|K3XMI8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si002916,35.67,5e-18,zf-HIT,Zinc finger, HIT-type; ZF_HIT,Zinc
finger, HIT-type; SUBFAMILY NOT NAMED,NULL; THYROID
RECEPT,CUFF.21528.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G28820.2 | Symbols:  | HIT-type Zinc finger family protein | ...   129   7e-31
AT4G28820.1 | Symbols:  | HIT-type Zinc finger family protein | ...   128   8e-31

>AT4G28820.2 | Symbols:  | HIT-type Zinc finger family protein |
           chr4:14230815-14232287 REVERSE LENGTH=172
          Length = 172

 Score =  129 bits (323), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 79/166 (47%), Positives = 95/166 (57%), Gaps = 35/166 (21%)

Query: 1   MGPR---QCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKP------------PSS 45
           M PR    C++C  V SKYKC SC +PYCSL CFK HKE+PC KP            P+ 
Sbjct: 1   MCPRATQTCEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCAKPSDPSSTEEKPASPAK 60

Query: 46  EV--------------------KTSAALESPVKKPIVIDEPIEVLQKFQLEAIASSSEIR 85
           EV                      S A E PV +PI+++E   +L+K Q EAIASSSEIR
Sbjct: 61  EVPVKRPEEANDVVEKTQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEIR 120

Query: 86  DALNDQALQELICRIDCSPNAENEFDKAMAEEAFRLFTDKILSTIN 131
           +AL D+ LQ+LI  ID S N   E D+AM  EAFR FTDKILS I+
Sbjct: 121 EALKDEPLQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKILSNIS 166


>AT4G28820.1 | Symbols:  | HIT-type Zinc finger family protein |
           chr4:14230815-14232287 REVERSE LENGTH=173
          Length = 173

 Score =  128 bits (322), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/167 (47%), Positives = 95/167 (56%), Gaps = 36/167 (21%)

Query: 1   MGPR---QCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKP-------------PS 44
           M PR    C++C  V SKYKC SC +PYCSL CFK HKE+PC KP             P+
Sbjct: 1   MCPRATQTCEICEKVVSKYKCPSCLVPYCSLGCFKIHKETPCAKPSDPSSTEEKPAASPA 60

Query: 45  SEV--------------------KTSAALESPVKKPIVIDEPIEVLQKFQLEAIASSSEI 84
            EV                      S A E PV +PI+++E   +L+K Q EAIASSSEI
Sbjct: 61  KEVPVKRPEEANDVVEKTQQKASAASPAKEIPVARPIIVEEEKYILEKTQFEAIASSSEI 120

Query: 85  RDALNDQALQELICRIDCSPNAENEFDKAMAEEAFRLFTDKILSTIN 131
           R+AL D+ LQ+LI  ID S N   E D+AM  EAFR FTDKILS I+
Sbjct: 121 REALKDEPLQKLIYSIDSSSNPLQELDEAMGIEAFREFTDKILSNIS 167