Miyakogusa Predicted Gene

Lj0g3v0318139.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318139.2 Non Chatacterized Hit- tr|I3T1X8|I3T1X8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,84.38,0.0000006,
,CUFF.21549.2
         (68 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...    49   6e-07
AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 | chr1:278...    49   6e-07

>AT1G73960.2 | Symbols: TAF2 | TBP-associated factor 2 |
          chr1:27805173-27814433 REVERSE LENGTH=1370
          Length = 1370

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 28/34 (82%)

Query: 17 YTELEIAVSEIGIVGLNAENLGIGGVWVDSDPIL 50
          YTELE++V +IGIVGL+AENLGI  V VD +P +
Sbjct: 44 YTELEVSVPDIGIVGLHAENLGIESVLVDGEPTV 77


>AT1G73960.1 | Symbols: TAF2 | TBP-associated factor 2 |
          chr1:27805173-27814433 REVERSE LENGTH=1390
          Length = 1390

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/34 (64%), Positives = 28/34 (82%)

Query: 17 YTELEIAVSEIGIVGLNAENLGIGGVWVDSDPIL 50
          YTELE++V +IGIVGL+AENLGI  V VD +P +
Sbjct: 44 YTELEVSVPDIGIVGLHAENLGIESVLVDGEPTV 77